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Report for CCDS3812.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3812.1 Public Homo sapiens 4 CBR4 24 110 108 CCDS HistoryNCBI Gene:84869Re-query CCDS DB by CCDS ID:3812.1Re-query CCDS DB by GeneID:84869See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3812.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306193.8 ENSP00000303525.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000306193.8Link to Ensembl Protein Viewer:ENSP00000303525.3Re-query CCDS DB by Nucleotide ID:ENST00000306193Re-query CCDS DB by Protein ID:ENSP00000303525
Original member Current member NCBI NM_032783.5 NP_116172.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032783.5Link to Protein Sequence:NP_116172.2Re-query CCDS DB by Nucleotide ID:NM_032783Re-query CCDS DB by Protein ID:NP_116172Link to BLAST:NP_116172.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116172.2 237 Q8N4T8-1 237 100% 0 0

Chromosomal Locations for CCDS 3812.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 168990150 168990328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 169002071 169002205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 169006755 169006891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 169007636 169007756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 169009948 169010089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGGACAAAGTGTGTGCTGTTTTTGGAGGCTCCCGAGGCATTGGCAGAGCTGTGGCCCAGTTAATGGCCC
GGAAAGGCTACCGACTGGCGGTCATTGCCAGAAACCTGGAAGGGGCCAAAGCCGCCGCCGGTGACCTCGG
CGGAGATCATTTGGCATTTAGCTGTGATGTTGCTAAAGAACATGATGTTCAAAATACATTTGAAGAGCTG
GAGAAACATTTAGGTCGAGTAAATTTCTTGGTAAATGCAGCTGGTATTAACAGGGATGGTCTTTTAGTAA
GAACAAAAACTGAAGATATGGTATCTCAGCTTCATACTAACCTCTTGGGTTCCATGCTGACCTGTAAAGC
TGCCATGAGGACTATGATTCAACAACAGGGAGGGTCTATTGTTAATGTAGGAAGCATTGTTGGCTTAAAA
GGCAACTCTGGCCAGTCCGTTTACAGTGCCAGTAAAGGAGGATTAGTTGGATTTTCACGTGCTCTTGCTA
AAGAGGTAGCAAGAAAGAAAATTAGAGTGAATGTAGTTGCACCAGGATTTGTACACACAGATATGACGAA
AGACTTGAAAGAAGAACATTTAAAGAAAAATATTCCTCTTGGGAGGTTTGGAGAAACTATTGAGGTGGCA
CATGCGGTTGTGTTTCTTTTAGAATCACCGTATATTACAGGGCATGTTCTGGTAGTGGATGGGGGATTAC
AACTCATTTTGTAA

Translation (237 aa):
MDKVCAVFGGSRGIGRAVAQLMARKGYRLAVIARNLEGAKAAAGDLGGDHLAFSCDVAKEHDVQNTFEEL
EKHLGRVNFLVNAAGINRDGLLVRTKTEDMVSQLHTNLLGSMLTCKAAMRTMIQQQGGSIVNVGSIVGLK
GNSGQSVYSASKGGLVGFSRALAKEVARKKIRVNVVAPGFVHTDMTKDLKEEHLKKNIPLGRFGETIEVA
HAVVFLLESPYITGHVLVVDGGLQLIL


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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