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Report for CCDS8125.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8125.1 Public Homo sapiens 11 BANF1 24 110 108 CCDS HistoryNCBI Gene:8815Re-query CCDS DB by CCDS ID:8125.1Re-query CCDS DB by GeneID:8815See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8125.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000312175.7 ENSP00000310275.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000312175.7Link to Ensembl Protein Viewer:ENSP00000310275.2Re-query CCDS DB by Nucleotide ID:ENST00000312175Re-query CCDS DB by Protein ID:ENSP00000310275
Original member Current member EBI ENST00000445560.6 ENSP00000416128.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000445560.6Link to Ensembl Protein Viewer:ENSP00000416128.2Re-query CCDS DB by Nucleotide ID:ENST00000445560Re-query CCDS DB by Protein ID:ENSP00000416128
Original member Current member EBI ENST00000527348.1 ENSP00000432867.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000527348.1Link to Ensembl Protein Viewer:ENSP00000432867.1Re-query CCDS DB by Nucleotide ID:ENST00000527348Re-query CCDS DB by Protein ID:ENSP00000432867
Original member Current member EBI ENST00000533166.5 ENSP00000433760.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000533166.5Link to Ensembl Protein Viewer:ENSP00000433760.1Re-query CCDS DB by Nucleotide ID:ENST00000533166Re-query CCDS DB by Protein ID:ENSP00000433760
Original member Current member NCBI NM_001143985.1 NP_001137457.1 Accepted alive Link to Nucleotide Sequence:NM_001143985.1Link to Protein Sequence:NP_001137457.1Re-query CCDS DB by Nucleotide ID:NM_001143985Re-query CCDS DB by Protein ID:NP_001137457Link to BLAST:NP_001137457.1
Original member Current member NCBI NM_003860.4 NP_003851.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003860.4Link to Protein Sequence:NP_003851.1Re-query CCDS DB by Nucleotide ID:NM_003860Re-query CCDS DB by Protein ID:NP_003851Link to BLAST:NP_003851.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137457.1 89 O75531 89 100% 0 0
NP_003851.1 89 O75531 89 100% 0 0

Chromosomal Locations for CCDS 8125.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 66003251 66003373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66003626 66003772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (270 nt):
ATGACAACCTCCCAAAAGCACCGAGACTTCGTGGCAGAGCCCATGGGGGAGAAGCCAGTGGGGAGCCTGG
CTGGGATTGGTGAAGTCCTGGGCAAGAAGCTGGAGGAAAGGGGTTTTGACAAGGCCTATGTTGTCCTTGG
CCAGTTTCTGGTGCTAAAGAAAGATGAAGACCTCTTCCGGGAATGGCTGAAAGACACTTGTGGCGCCAAC
GCCAAGCAGTCCCGGGACTGCTTCGGATGCCTTCGAGAGTGGTGCGACGCCTTCTTGTGA

Translation (89 aa):
MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFREWLKDTCGAN
AKQSRDCFGCLREWCDAFL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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