NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS11581.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11581.2 Public Homo sapiens 17 MBTD1 24 110 108 CCDS HistoryNCBI Gene:54799Re-query CCDS DB by CCDS ID:11581.2Re-query CCDS DB by GeneID:54799See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 11581.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000415868.5 ENSP00000403946.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000415868.5Link to Ensembl Protein Viewer:ENSP00000403946.1Re-query CCDS DB by Nucleotide ID:ENST00000415868Re-query CCDS DB by Protein ID:ENSP00000403946
Original member Current member EBI ENST00000586178.6 ENSP00000468304.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000586178.6Link to Ensembl Protein Viewer:ENSP00000468304.1Re-query CCDS DB by Nucleotide ID:ENST00000586178Re-query CCDS DB by Protein ID:ENSP00000468304
Original member Current member NCBI NM_017643.3 NP_060113.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017643.3Link to Protein Sequence:NP_060113.2Re-query CCDS DB by Nucleotide ID:NM_017643Re-query CCDS DB by Protein ID:NP_060113Link to BLAST:NP_060113.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060113.2 628 Q05BQ5-1 628 100% 0 0

Chromosomal Locations for CCDS 11581.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 51180576 51180694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51192203 51192280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51192782 51193016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51193428 51193510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51195214 51195361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51201592 51201696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51202022 51202077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51202701 51202935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51203140 51203228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51203791 51203925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51206888 51207005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51217334 51217416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51218930 51219044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51220330 51220463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51225008 51225161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1887 nt):
ATGTTTGACGGTTATGATAGCTGCAGTGAGGACACAAGCAGCAGCTCCAGCTCCGAAGAGAGTGAGGAAG
AAGTCGCTCCTTTACCTTCTAATCTCCCGATTATCAAAAACAATGGGCAAGTCTACACATACCCAGATGG
TAAATCTGGCATGGCTACCTGTGAGATGTGTGGGATGGTTGGCGTCCGAGATGCTTTTTACTCTAAAACA
AAGCGTTTCTGTAGCGTTTCATGTTCAAGAAGTTACTCGTCAAACTCCAAGAAGGCAAGCATTTTGGCCA
GACTTCAGGGTAAGCCTCCAACAAAGAAAGCAAAAGTTCTTCAGAAACAACCTTTAGTTGCTAAGCTAGC
CGCATATGCTCAGTATCAAGCTACCTTGCAAAATCAAGCAAAGACAAAAGCAGCAGTCTCCATGGAAGGT
TTCAGCTGGGGTAACTACATCAATAGCAATAGCTTTATAGCAGCTCCGGTTACCTGTTTTAAACATGCAC
CTATGGGGACCTGCTGGGGTGATATCTCAGAAAATGTGAGAGTAGAAGTTCCCAATACAGACTGCAGCCT
ACCTACCAAAGTCTTCTGGATTGCTGGAATTGTAAAATTAGCAGGTTACAATGCCCTTTTAAGATATGAA
GGATTTGAAAATGACTCTGGTCTGGACTTCTGGTGCAATATATGTGGTTCTGATATCCATCCAGTTGGTT
GGTGTGCAGCCAGCGGAAAACCTCTTGTTCCTCCTAGAACTATTCAGCATAAATATACAAACTGGAAAGC
TTTTCTAGTGAAACGACTTACTGGTGCCAAAACACTGCCTCCTGATTTCTCCCAAAAGGTTTCAGAGAGT
ATGCAGTATCCTTTCAAACCTTGCATGAGAGTAGAAGTGGTTGACAAGAGGCATTTGTGTCGAACACGAG
TAGCAGTGGTGGAAAGTGTAATTGGAGGAAGATTAAGACTAGTGTATGAAGAAAGCGAAGATAGAACAGA
TGACTTCTGGTGCCATATGCACAGCCCATTAATACATCATATTGGTTGGTCTCGAAGCATAGGTCATCGA
TTCAAAAGATCTGATATTACAAAGAAACAGGATGGACATTTTGATACACCACCACATTTATTTGCTAAGG
TAAAAGAAGTAGACCAGAGTGGGGAATGGTTCAAGGAAGGAATGAAATTGGAAGCTATAGACCCATTAAA
TCTTTCTACAATATGTGTCGCAACCATTAGAAAGGTGCTAGCTGACGGATTCCTGATGATTGGGATCGAT
GGCTCAGAAGCAGCAGACGGATCTGACTGGTTCTGTTACCATGCAACCTCTCCTTCTATTTTCCCTGTCG
GTTTCTGTGAAATTAACATGATTGAACTTACTCCACCCAGAGGTTACACAAAACTTCCTTTTAAATGGTT
TGACTACCTCAGGGAAACTGGCTCCATTGCAGCACCAGTAAAACTATTTAATAAGGATGTTCCAAATCAC
GGATTTCGTGTAGGAATGAAATTAGAAGCAGTAGATCTCATGGAGCCACGTTTAATATGTGTAGCCACAG
TAACTCGAATTATTCATCGTCTCTTGAGGATACATTTTGATGGATGGGAAGAAGAGTATGATCAGTGGGT
AGACTGTGAGTCACCTGACCTCTATCCTGTAGGGTGGTGTCAGTTAACTGGATATCAACTACAGCCTCCA
GCATCACAGTCATCAAGAGAAAACCAATCAGCTTCATCAAAACAGAAGAAAAAGGCTAAGTCCCAGCAAT
ACAAAGGACATAAGAAAATGACAACACTGCAGCTGAAGGAGGAGTTGCTGGATGGAGAGGATTATAATTT
CCTTCAAGGAGCGTCTGATCAGGAAAGCAATGGCTCTGCCAACTTCTACATCAAACAAGAGCCATGA

Translation (628 aa):
MFDGYDSCSEDTSSSSSSEESEEEVAPLPSNLPIIKNNGQVYTYPDGKSGMATCEMCGMVGVRDAFYSKT
KRFCSVSCSRSYSSNSKKASILARLQGKPPTKKAKVLQKQPLVAKLAAYAQYQATLQNQAKTKAAVSMEG
FSWGNYINSNSFIAAPVTCFKHAPMGTCWGDISENVRVEVPNTDCSLPTKVFWIAGIVKLAGYNALLRYE
GFENDSGLDFWCNICGSDIHPVGWCAASGKPLVPPRTIQHKYTNWKAFLVKRLTGAKTLPPDFSQKVSES
MQYPFKPCMRVEVVDKRHLCRTRVAVVESVIGGRLRLVYEESEDRTDDFWCHMHSPLIHHIGWSRSIGHR
FKRSDITKKQDGHFDTPPHLFAKVKEVDQSGEWFKEGMKLEAIDPLNLSTICVATIRKVLADGFLMIGID
GSEAADGSDWFCYHATSPSIFPVGFCEINMIELTPPRGYTKLPFKWFDYLRETGSIAAPVKLFNKDVPNH
GFRVGMKLEAVDLMEPRLICVATVTRIIHRLLRIHFDGWEEEYDQWVDCESPDLYPVGWCQLTGYQLQPP
ASQSSRENQSASSKQKKKAKSQQYKGHKKMTTLQLKEELLDGEDYNFLQGASDQESNGSANFYIKQEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH