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Report for CCDS1870.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1870.1 Public Homo sapiens 2 B3GNT2 24 110 108 CCDS HistoryNCBI Gene:10678Re-query CCDS DB by CCDS ID:1870.1Re-query CCDS DB by GeneID:10678See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1870.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301998.5 ENSP00000305595.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000301998.5Link to Ensembl Protein Viewer:ENSP00000305595.4Re-query CCDS DB by Nucleotide ID:ENST00000301998Re-query CCDS DB by Protein ID:ENSP00000305595
Original member Current member EBI ENST00000405767.1 ENSP00000384692.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000405767.1Link to Ensembl Protein Viewer:ENSP00000384692.1Re-query CCDS DB by Nucleotide ID:ENST00000405767Re-query CCDS DB by Protein ID:ENSP00000384692
Original member Current member NCBI NM_001319075.2 NP_001306004.1 Accepted alive Link to Nucleotide Sequence:NM_001319075.2Link to Protein Sequence:NP_001306004.1Re-query CCDS DB by Nucleotide ID:NM_001319075Re-query CCDS DB by Protein ID:NP_001306004Link to BLAST:NP_001306004.1
Original member Current member NCBI NM_006577.6 NP_006568.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006577.6Link to Protein Sequence:NP_006568.2Re-query CCDS DB by Nucleotide ID:NM_006577Re-query CCDS DB by Protein ID:NP_006568Link to BLAST:NP_006568.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001306004.1 397 Q9NY97-1 397 100% 0 0
NP_006568.2 397 Q9NY97-1 397 100% 0 0

Chromosomal Locations for CCDS 1870.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 62222221 62223414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1194 nt):
ATGAGTGTTGGACGTCGAAGAATAAAGTTGTTGGGTATCCTGATGATGGCAAATGTCTTCATTTATTTTA
TTATGGAAGTCTCCAAAAGCAGTAGCCAAGAAAAAAATGGAAAAGGGGAAGTAATAATACCCAAAGAGAA
GTTCTGGAAGATATCTACCCCTCCCGAGGCATACTGGAACCGAGAGCAAGAGAAGCTGAACCGGCAGTAC
AACCCCATCCTGAGCATGCTGACCAACCAGACGGGGGAGGCGGGCAGGCTCTCCAATATAAGCCATCTGA
ACTACTGCGAACCTGACCTGAGGGTCACGTCGGTGGTTACGGGTTTTAACAACTTGCCGGACAGATTTAA
AGACTTTCTGCTGTATTTGAGATGCCGCAATTATTCACTGCTTATAGATCAGCCGGATAAGTGTGCAAAG
AAACCTTTCTTGTTGCTGGCGATTAAGTCCCTCACTCCACATTTTGCCAGAAGGCAAGCAATCCGGGAAT
CCTGGGGCCAAGAAAGCAACGCAGGGAACCAAACGGTGGTGCGAGTCTTCCTGCTGGGCCAGACACCCCC
AGAGGACAACCACCCCGACCTTTCAGATATGCTGAAATTTGAGAGTGAGAAGCACCAAGACATTCTTATG
TGGAACTACAGAGACACTTTCTTCAACTTGTCTCTGAAGGAAGTGCTGTTTCTCAGGTGGGTAAGTACTT
CCTGCCCAGACACTGAGTTTGTTTTCAAGGGCGATGACGATGTTTTTGTGAACACCCATCACATCCTGAA
TTACTTGAATAGTTTATCCAAGACCAAAGCCAAAGATCTCTTCATAGGTGATGTGATCCACAATGCTGGA
CCTCATCGGGATAAGAAGCTGAAGTACTACATCCCAGAAGTTGTTTACTCTGGCCTCTACCCACCCTATG
CAGGGGGAGGGGGGTTCCTCTACTCCGGCCACCTGGCCCTGAGGCTGTACCATATCACTGACCAGGTCCA
TCTCTACCCCATTGATGACGTTTATACTGGAATGTGCCTTCAGAAACTCGGCCTCGTTCCAGAGAAACAC
AAAGGCTTCAGGACATTTGATATCGAGGAGAAAAACAAAAATAACATCTGCTCCTATGTAGATCTGATGT
TAGTACATAGTAGAAAACCTCAAGAGATGATTGATATTTGGTCTCAGTTGCAGAGTGCTCATTTAAAATG
CTAA

Translation (397 aa):
MSVGRRRIKLLGILMMANVFIYFIMEVSKSSSQEKNGKGEVIIPKEKFWKISTPPEAYWNREQEKLNRQY
NPILSMLTNQTGEAGRLSNISHLNYCEPDLRVTSVVTGFNNLPDRFKDFLLYLRCRNYSLLIDQPDKCAK
KPFLLLAIKSLTPHFARRQAIRESWGQESNAGNQTVVRVFLLGQTPPEDNHPDLSDMLKFESEKHQDILM
WNYRDTFFNLSLKEVLFLRWVSTSCPDTEFVFKGDDDVFVNTHHILNYLNSLSKTKAKDLFIGDVIHNAG
PHRDKKLKYYIPEVVYSGLYPPYAGGGGFLYSGHLALRLYHITDQVHLYPIDDVYTGMCLQKLGLVPEKH
KGFRTFDIEEKNKNNICSYVDLMLVHSRKPQEMIDIWSQLQSAHLKC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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