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Report for CCDS14426.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14426.2 Public Homo sapiens X SLC16A2 24 110 108 CCDS HistoryNCBI Gene:6567Re-query CCDS DB by CCDS ID:14426.2Re-query CCDS DB by GeneID:6567See the combined annotation on chromosome X in Sequence Viewer

Public Note for CCDS 14426.1
The coding region has been updated to shorten the N-terminus to one that is more supported by available transcript and protein data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 14426.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000587091.6 ENSP00000465734.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000587091.6Link to Ensembl Protein Viewer:ENSP00000465734.1Re-query CCDS DB by Nucleotide ID:ENST00000587091Re-query CCDS DB by Protein ID:ENSP00000465734
Original member Current member NCBI NM_006517.5 NP_006508.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006517.5Link to Protein Sequence:NP_006508.2Re-query CCDS DB by Nucleotide ID:NM_006517Re-query CCDS DB by Protein ID:NP_006508Link to BLAST:NP_006508.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006508.2 539 P36021 539 100% 0 0

Chromosomal Locations for CCDS 14426.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 74421638 74422067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74520990 74521134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74524359 74524809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74525750 74525893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74529213 74529441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74531333 74531553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1620 nt):
ATGGCGCTGCAAAGCCAGGCGAGCGAGGAAGCAAAGGGGCCCTGGCAGGAGGCAGACCAGGAACAGCAGG
AGCCGGTGGGTAGCCCAGAGCCGGAGTCTGAGCCGGAGCCTGAGCCCGAGCCCGAGCCCGTGCCAGTGCC
CCCGCCCGAGCCCCAGCCGGAGCCCCAGCCCCTACCGGACCCCGCACCCCTGCCGGAGCTGGAGTTCGAG
TCCGAGCGGGTGCACGAACCCGAGCCCACGCCTACGGTAGAGACCCGCGGCACCGCGCGCGGCTTCCAGC
CTCCCGAAGGTGGCTTCGGCTGGGTGGTGGTGTTCGCTGCCACCTGGTGCAACGGCTCCATCTTCGGCAT
CCATAACTCTGTCGGGATCCTCTACTCCATGCTGCTAGAGGAGGAAAAGGAAAAAAATCGCCAAGTGGAG
TTCCAAGCAGCATGGGTCGGAGCCCTCGCGATGGGTATGATCTTCTTCTGTTCTCCCATTGTGAGTATAT
TCACTGACCGTTTGGGCTGCCGAATCACAGCAACCGCGGGGGCTGCCGTTGCTTTCATTGGCCTCCATAC
CAGCTCCTTCACCAGCTCCCTAAGCCTGCGCTACTTCACCTACGGGATTCTCTTTGGTTGTGGCTGTTCC
TTCGCCTTTCAGCCATCCCTCGTCATCCTGGGCCACTACTTTCAACGCCGCCTGGGTCTGGCCAATGGTG
TGGTGTCTGCTGGGAGTAGCATTTTCTCCATGTCCTTCCCCTTCCTCATCAGAATGCTGGGGGATAAGAT
CAAGCTGGCCCAAACCTTCCAGGTGCTGAGTACCTTCATGTTTGTTCTTATGCTGCTTTCACTCACCTAC
CGGCCCCTCCTGCCCAGCTCCCAGGACACCCCAAGCAAGAGAGGTGTCCGCACCCTGCACCAGCGCTTTC
TGGCTCAGCTCAGGAAGTACTTCAACATGCGAGTGTTCCGCCAACGCACTTACCGCATCTGGGCCTTCGG
AATTGCTGCTGCTGCCCTTGGCTACTTTGTTCCCTATGTACACCTGATGAAGTATGTGGAGGAGGAGTTC
TCAGAAATCAAGGAGACCTGGGTGCTCTTGGTGTGTATTGGGGCTACCTCAGGCCTTGGGCGTCTTGTGT
CAGGCCACATCAGTGACTCCATCCCTGGACTTAAGAAGATCTACTTGCAGGTCCTTTCCTTCCTGCTCCT
GGGCCTGATGTCCATGATGATTCCCCTGTGCCGGGACTTCGGGGGCCTTATCGTCGTCTGTCTTTTCCTG
GGCCTTTGCGATGGCTTCTTCATCACCATCATGGCCCCCATTGCATTTGAGCTGGTGGGCCCAATGCAGG
CCTCACAGGCCATTGGCTACCTCCTGGGCATGATGGCCCTGCCAATGATTGCTGGGCCCCCCATTGCAGG
CCTACTCCGCAACTGTTTTGGGGACTACCATGTGGCCTTCTACTTTGCCGGTGTGCCCCCCATCATCGGG
GCTGTAATCCTCTTCTTCGTCCCTCTGATGCATCAAAGGATGTTCAAGAAAGAGCAGAGAGATTCCAGCA
AGGATAAGATGTTGGCCCCTGACCCAGACCCCAATGGGGAGCTACTGCCGGGCTCCCCCAACCCTGAGGA
ACCAATCTAA

Translation (539 aa):
MALQSQASEEAKGPWQEADQEQQEPVGSPEPESEPEPEPEPEPVPVPPPEPQPEPQPLPDPAPLPELEFE
SERVHEPEPTPTVETRGTARGFQPPEGGFGWVVVFAATWCNGSIFGIHNSVGILYSMLLEEEKEKNRQVE
FQAAWVGALAMGMIFFCSPIVSIFTDRLGCRITATAGAAVAFIGLHTSSFTSSLSLRYFTYGILFGCGCS
FAFQPSLVILGHYFQRRLGLANGVVSAGSSIFSMSFPFLIRMLGDKIKLAQTFQVLSTFMFVLMLLSLTY
RPLLPSSQDTPSKRGVRTLHQRFLAQLRKYFNMRVFRQRTYRIWAFGIAAAALGYFVPYVHLMKYVEEEF
SEIKETWVLLVCIGATSGLGRLVSGHISDSIPGLKKIYLQVLSFLLLGLMSMMIPLCRDFGGLIVVCLFL
GLCDGFFITIMAPIAFELVGPMQASQAIGYLLGMMALPMIAGPPIAGLLRNCFGDYHVAFYFAGVPPIIG
AVILFFVPLMHQRMFKKEQRDSSKDKMLAPDPDPNGELLPGSPNPEEPI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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