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Report for CCDS5199.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5199.1 Public Homo sapiens 6 PEX3 24 110 108 CCDS HistoryNCBI Gene:8504Re-query CCDS DB by CCDS ID:5199.1Re-query CCDS DB by GeneID:8504See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5199.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367591.5 ENSP00000356563.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367591.5Link to Ensembl Protein Viewer:ENSP00000356563.4Re-query CCDS DB by Nucleotide ID:ENST00000367591Re-query CCDS DB by Protein ID:ENSP00000356563
Original member Current member NCBI NM_003630.3 NP_003621.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003630.3Link to Protein Sequence:NP_003621.1Re-query CCDS DB by Nucleotide ID:NM_003630Re-query CCDS DB by Protein ID:NP_003621Link to BLAST:NP_003621.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003621.1 373 P56589 373 100% 0 0

Chromosomal Locations for CCDS 5199.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 143451043 143451115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143459085 143459216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143462916 143462997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143468122 143468165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143470961 143471085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143471383 143471449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143471557 143471611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143472160 143472328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143474786 143474856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143479076 143479198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143485152 143485248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 143489143 143489226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGCTGAGGTCTGTATGGAATTTTCTGAAACGCCACAAAAAGAAATGCATCTTCCTGGGCACGGTCCTTG
GAGGAGTATATATTCTGGGGAAATATGGACAGAAGAAAATCAGAGAAATACAGGAAAGGGAGGCTGCAGA
ATACATTGCCCAAGCACGACGACAATATCATTTTGAAAGTAACCAGAGGACTTGCAATATGACAGTGCTG
TCCATGCTTCCAACACTGAGAGAGGCCTTAATGCAGCAACTGAATTCCGAGAGCCTCACAGCTCTGCTAA
AAAACAGGCCTTCAAACAAGCTAGAAATATGGGAGGATCTGAAGATAATAAGTTTCACAAGAAGTACTGT
GGCTGTATACAGTACCTGTATGCTGGTTGTTCTTTTGCGGGTCCAGTTAAACATAATTGGTGGATATATT
TACCTGGATAATGCAGCAGTTGGCAAAAATGGCACTACAATTCTTGCTCCCCCAGATGTCCAACAGCAGT
ATTTATCAAGTATTCAGCACCTACTTGGAGATGGCCTGACAGAATTGATCACTGTCATTAAACAAGCTGT
GCAGAAGGTTTTAGGAAGTGTTTCTCTTAAACATTCTTTGTCCCTTTTGGACTTGGAGCAAAAACTAAAA
GAAATCAGAAATCTCGTTGAGCAGCATAAGTCTTCTTCTTGGATTAATAAAGATGGATCCAAACCTTTAT
TATGCCATTATATGATGCCAGATGAAGAAACTCCATTAGCAGTGCAGGCCTGTGGACTTTCTCCTCGAGA
CATTACCACTATTAAACTTCTCAATGAAACTAGAGACATGTTGGAAAGCCCAGATTTTAGTACAGTTTTG
AATACCTGTTTAAACCGAGGTTTTAGTAGACTTCTAGACAATATGGCTGAGTTCTTTCGACCTACTGAAC
AGGACCTGCAACATGGTAACTCTATGAATAGTCTTTCCAGTGTCAGCCTGCCTTTAGCTAAGATAATTCC
AATAGTAAACGGACAGATCCATTCAGTTTGCAGTGAAACACCTAGTCATTTTGTTCAGGATCTGTTGACA
ATGGAGCAAGTGAAAGACTTTGCTGCTAATGTGTATGAAGCTTTTAGTACCCCTCAGCAACTGGAGAAAT
GA

Translation (373 aa):
MLRSVWNFLKRHKKKCIFLGTVLGGVYILGKYGQKKIREIQEREAAEYIAQARRQYHFESNQRTCNMTVL
SMLPTLREALMQQLNSESLTALLKNRPSNKLEIWEDLKIISFTRSTVAVYSTCMLVVLLRVQLNIIGGYI
YLDNAAVGKNGTTILAPPDVQQQYLSSIQHLLGDGLTELITVIKQAVQKVLGSVSLKHSLSLLDLEQKLK
EIRNLVEQHKSSSWINKDGSKPLLCHYMMPDEETPLAVQACGLSPRDITTIKLLNETRDMLESPDFSTVL
NTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIVNGQIHSVCSETPSHFVQDLLT
MEQVKDFAANVYEAFSTPQQLEK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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