NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS12003.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12003.1 Public Homo sapiens 18 TIMM21 24 110 108 CCDS HistoryNCBI Gene:29090Re-query CCDS DB by CCDS ID:12003.1Re-query CCDS DB by GeneID:29090See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12003.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000169551.11 ENSP00000169551.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000169551.11Link to Ensembl Protein Viewer:ENSP00000169551.6Re-query CCDS DB by Nucleotide ID:ENST00000169551Re-query CCDS DB by Protein ID:ENSP00000169551
Original member Current member NCBI NM_014177.3 NP_054896.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014177.3Link to Protein Sequence:NP_054896.2Re-query CCDS DB by Nucleotide ID:NM_014177Re-query CCDS DB by Protein ID:NP_054896Link to BLAST:NP_054896.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_054896.2 248 Q9BVV7 248 100% 0 0

Chromosomal Locations for CCDS 12003.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 74148809 74149109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74155145 74155207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74155306 74155403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74158014 74158087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74158171 74158276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74158376 74158480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (747 nt):
ATGATTTGTACTTTTCTACGAGCCGTACAGTATACGGAGAAGCTGCACAGGTCCTCGGCAAAGCGATTGC
TTTTGCCATACATCGTGCTTAACAAAGCGTGCTTGAAGACTGAGCCCAGTTTGAGATGTGGGCTTCAATA
TCAAAAGAAAACGCTGCGACCTAGATGTATTCTTGGAGTCACCCAGAAAACCATCTGGACGCAGGGACCG
AGCCCCCGAAAAGCAAAGGAGGATGGCAGCAAACAAGTGTCTGTGCACAGGAGTCAGAGAGGGGGAACCG
CCGTCCCAACATCACAAAAAGTGAAAGAAGCCGGAAGAGATTTTACCTATTTAATAGTGGTGCTTTTTGG
AATCAGCATTACAGGTGGCTTGTTTTACACGATTTTCAAAGAACTTTTTTCTTCATCCAGTCCTAGCAAG
ATATATGGGAGAGCCTTAGAAAAATGCAGATCACATCCTGAGGTGATCGGTGTCTTTGGTGAGTCTGTTA
AAGGCTATGGGGAGGTGACAAGGCGGGGTCGCCGGCAGCATGTCAGGTTCACTGAATATGTAAAAGATGG
GCTGAAACACACGTGTGTGAAATTCTACATTGAGGGCTCTGAGCCAGGGAAGCAAGGAACGGTGTATGCG
CAAGTGAAAGAGAACCCAGGAAGTGGTGAATATGATTTTCGATATATATTTGTAGAAATTGAATCTTATC
CTAGAAGAACTATTATCATTGAAGATAATCGATCCCAAGATGATTAA

Translation (248 aa):
MICTFLRAVQYTEKLHRSSAKRLLLPYIVLNKACLKTEPSLRCGLQYQKKTLRPRCILGVTQKTIWTQGP
SPRKAKEDGSKQVSVHRSQRGGTAVPTSQKVKEAGRDFTYLIVVLFGISITGGLFYTIFKELFSSSSPSK
IYGRALEKCRSHPEVIGVFGESVKGYGEVTRRGRRQHVRFTEYVKDGLKHTCVKFYIEGSEPGKQGTVYA
QVKENPGSGEYDFRYIFVEIESYPRRTIIIEDNRSQDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH