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Report for CCDS31126.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31126.1 Public Homo sapiens 1 SH3BP5L 24 110 108 CCDS HistoryNCBI Gene:80851Re-query CCDS DB by CCDS ID:31126.1Re-query CCDS DB by GeneID:80851See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31126.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366472.6 ENSP00000355428.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000366472.6Link to Ensembl Protein Viewer:ENSP00000355428.5Re-query CCDS DB by Nucleotide ID:ENST00000366472Re-query CCDS DB by Protein ID:ENSP00000355428
Original member Current member NCBI NM_030645.3 NP_085148.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030645.3Link to Protein Sequence:NP_085148.1Re-query CCDS DB by Nucleotide ID:NM_030645Re-query CCDS DB by Protein ID:NP_085148Link to BLAST:NP_085148.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_085148.1 393 Q7L8J4-1 393 100% 0 0

Chromosomal Locations for CCDS 31126.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 248811900 248812370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 248812989 248813162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 248814449 248814610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 248816534 248816662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 248816822 248816884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 248824753 248824935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1182 nt):
ATGGCTGAGCTCAGACAGGTTCCAGGAGGGCGGGAGACCCCACAGGGGGAGCTGCGGCCTGAAGTTGTAG
AGGATGAAGTCCCTAGGAGCCCAGTCGCAGAAGAGCCTGGAGGAGGTGGAAGCAGCAGCAGTGAGGCCAA
ATTGTCCCCAAGAGAGGAGGAAGAACTGGATCCTAGAATACAGGAGGAGTTGGAGCACCTGAACCAGGCC
AGCGAGGAGATCAACCAGGTGGAACTACAGCTGGATGAGGCCAGGACCACCTATCGGAGGATCCTACAGG
AGTCGGCGAGGAAACTGAATACACAGGGTTCCCACTTGGGGAGCTGCATCGAGAAAGCCCGGCCCTACTA
TGAGGCTCGGCGGCTGGCTAAGGAGGCTCAGCAGGAGACACAGAAGGCAGCGCTGCGGTACGAGCGGGCC
GTAAGCATGCACAACGCTGCTCGAGAAATGGTGTTTGTGGCTGAGCAGGGCGTCATGGCTGACAAGAACC
GACTGGACCCCACGTGGCAGGAGATGCTGAACCATGCTACCTGCAAGGTGAATGAGGCGGAGGAAGAGCG
GCTTCGAGGTGAGCGGGAGCACCAGCGAGTGACTCGGCTGTGCCAACAGGCTGAGGCTCGGGTCCAAGCC
CTGCAGAAGACCCTCCGGAGGGCCATCGGCAAGAGCCGCCCCTACTTTGAGCTCAAGGCCCAGTTCAGCC
AGATCCTGGAGGAGCACAAGGCCAAGGTGACAGAACTGGAGCAGCAGGTAGCTCAGGCCAAGACGCGCTA
CTCCGTGGCCCTTCGTAACCTGGAGCAGATCAGCGAGCAGATTCACGCACGGCGCCGCGGGGGTCTGCCT
CCCCACCCCCTGGGCCCTCGGCGCTCCTCCCCCGTGGGGGCCGAGGCAGGACCCGAGGACATGGAGGACG
GAGACAGCGGGATTGAGGGGGCCGAGGGTGCGGGGCTGGAGGAGGGCAGCAGCCTGGGGCCCGGCCCCGC
CCCCGACACCGATACCCTGAGTCTGCTGAGCCTGCGCACGGTGGCTTCAGACCTGCAGAAGTGCGACTCC
GTGGAGCACTTGCGAGGCCTCTCGGACCACGTCAGTCTGGACGGCCAAGAGCTGGGAACGCGGAGTGGAG
GGCGCCGGGGCAGCGACGGCGGAGCCCGTGGGGGTCGGCACCAGCGCAGCGTCAGCCTGTAG

Translation (393 aa):
MAELRQVPGGRETPQGELRPEVVEDEVPRSPVAEEPGGGGSSSSEAKLSPREEEELDPRIQEELEHLNQA
SEEINQVELQLDEARTTYRRILQESARKLNTQGSHLGSCIEKARPYYEARRLAKEAQQETQKAALRYERA
VSMHNAAREMVFVAEQGVMADKNRLDPTWQEMLNHATCKVNEAEEERLRGEREHQRVTRLCQQAEARVQA
LQKTLRRAIGKSRPYFELKAQFSQILEEHKAKVTELEQQVAQAKTRYSVALRNLEQISEQIHARRRGGLP
PHPLGPRRSSPVGAEAGPEDMEDGDSGIEGAEGAGLEEGSSLGPGPAPDTDTLSLLSLRTVASDLQKCDS
VEHLRGLSDHVSLDGQELGTRSGGRRGSDGGARGGRHQRSVSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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