NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS13461.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13461.1 Public Homo sapiens 20 ZBP1 24 110 108 CCDS HistoryNCBI Gene:81030Re-query CCDS DB by CCDS ID:13461.1Re-query CCDS DB by GeneID:81030See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13461.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371173.8 ENSP00000360215.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371173.8Link to Ensembl Protein Viewer:ENSP00000360215.3Re-query CCDS DB by Nucleotide ID:ENST00000371173Re-query CCDS DB by Protein ID:ENSP00000360215
Original member Current member NCBI NM_030776.3 NP_110403.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030776.3Link to Protein Sequence:NP_110403.2Re-query CCDS DB by Nucleotide ID:NM_030776Re-query CCDS DB by Protein ID:NP_110403Link to BLAST:NP_110403.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_110403.2 429 Q9H171-1 429 100% 0 0

Chromosomal Locations for CCDS 13461.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 57604573 57604769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 57610149 57610367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 57611727 57611930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 57613163 57613330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 57614887 57615060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 57615512 57615580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 57616244 57616468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 57620262 57620295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1290 nt):
ATGGCCCAGGCTCCTGCTGACCCGGGCAGAGAAGGCCACCTTGAACAAAGAATCCTGCAGGTGCTGACAG
AGGCTGGCTCCCCGGTGAAACTTGCCCAGCTGGTGAAGGAATGCCAAGCACCCAAGAGGGAGCTCAACCA
AGTCCTCTACCGAATGAAAAAGGAGTTGAAAGTCTCCCTCACATCCCCTGCCACCTGGTGCTTGGGCGGG
ACTGATCCTGAAGGCGAGGGTCCTGCAGAGCTGGCCTTGTCCAGCCCTGCCGAGAGGCCCCAGCAACATG
CAGCTACAATTCCAGAGACCCCTGGCCCTCAGTTCAGCCAACAACGGGAGGAAGACATCTACAGGTTTCT
CAAAGACAATGGTCCCCAGAGGGCCCTGGTCATCGCCCAAGCACTGGGAATGAGGACAGCAAAAGATGTG
AACCGAGACTTGTACAGGATGAAGAGCAGGCACCTTCTGGACATGGATGAGCAGTCCAAAGCATGGACGA
TTTACCGCCCAGAAGATTCTGGAAGAAGAGCAAAGTCAGCCTCAATTATTTACCAGCACAATCCAATCAA
CATGATCTGCCAGAATGGACCCAACAGCTGGATTTCCATTGCAAACTCCGAAGCCATCCAGATTGGACAC
GGGAACATCATTACAAGACAGACAGTCTCCAGGGAGGACGGTTCCGCCGGTCCACGCCACCTCCCTTCAA
TGGCACCAGGTGATTCCTCAACTTGGGGGACCCTAGTTGATCCCTGGGGGCCCCAGGACATCCACATGGA
GCAGTCCATACTGAGACGGGTGCAGCTGGGACACAGCAATGAGATGAGGCTCCACGGCGTCCCGTCCGAG
GGCCCTGCCCACATCCCCCCTGGCAGCCCCCCAGTCTCTGCCACTGCTGCCGGCCCAGAAGCTTCGTTTG
AAGCAAGAATTCCCAGTCCAGGAACTCACCCTGAGGGGGAAGCCGCCCAGAGAATCCACATGAAATCGTG
CTTTCTCGAGGACGCCACCATCGGCAACAGCAACAAAATGTCTATCAGCCCAGGGGTGGCTGGCCCAGGA
GGAGTCGCAGGGTCTGGAGAGGGGGAGCCAGGGGAGGACGCAGGTCGTCGTCCCGCAGACACACAATCCA
GAAGTCACTTTCCTCGAGACATTGGTCAGCCCATCACTCCCAGCCACTCGAAGCTCACCCCCAAGCTGGA
AACTATGACTCTTGGAAACAGGAGTCACAAAGCTGCAGAAGGCAGCCACTATGTGGATGAAGCCTCACAC
GAGGGGAGCTGGTGGGGAGGTGGGATTTAG

Translation (429 aa):
MAQAPADPGREGHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSLTSPATWCLGG
TDPEGEGPAELALSSPAERPQQHAATIPETPGPQFSQQREEDIYRFLKDNGPQRALVIAQALGMRTAKDV
NRDLYRMKSRHLLDMDEQSKAWTIYRPEDSGRRAKSASIIYQHNPINMICQNGPNSWISIANSEAIQIGH
GNIITRQTVSREDGSAGPRHLPSMAPGDSSTWGTLVDPWGPQDIHMEQSILRRVQLGHSNEMRLHGVPSE
GPAHIPPGSPPVSATAAGPEASFEARIPSPGTHPEGEAAQRIHMKSCFLEDATIGNSNKMSISPGVAGPG
GVAGSGEGEPGEDAGRRPADTQSRSHFPRDIGQPITPSHSKLTPKLETMTLGNRSHKAAEGSHYVDEASH
EGSWWGGGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH