NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS75747.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75747.1 Public Homo sapiens 8 YTHDF3 24 110 108 CCDS HistoryNCBI Gene:253943Re-query CCDS DB by CCDS ID:75747.1Re-query CCDS DB by GeneID:253943See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75747.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000539294.6 ENSP00000473496.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000539294.6Link to Ensembl Protein Viewer:ENSP00000473496.2Re-query CCDS DB by Nucleotide ID:ENST00000539294Re-query CCDS DB by Protein ID:ENSP00000473496
Original member Current member NCBI NM_152758.6 NP_689971.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152758.6Link to Protein Sequence:NP_689971.4Re-query CCDS DB by Nucleotide ID:NM_152758Re-query CCDS DB by Protein ID:NP_689971Link to BLAST:NP_689971.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689971.4 585 Q7Z739 585 100% 0 0

Chromosomal Locations for CCDS 75747.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 63168878 63168901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 63169387 63169411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 63175331 63175416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 63186147 63187745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 63209683 63209706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1758 nt):
ATGTCAGCCACTAGCGTGGATCAGAGACCTAAAGGGCAAGGAAATAAAGTTTCAGTACAAAACGGTTCGA
TTCATCAAAAAGATGCTGTAAATGATGATGATTTTGAGCCATACTTAAGTAGCCAGACAAATCAGAGTAA
CAGCTATCCACCAATGTCAGATCCATACATGCCTAGTTACTATGCTCCATCCATTGGATTTCCATATTCT
CTTGGGGAAGCAGCGTGGTCCACAGCTGGAGACCAGCCTATGCCATATCTGACAACCTATGGACAAATGA
GTAATGGAGAACATCACTATATACCAGATGGTGTATTTAGTCAACCTGGGGCATTAGGAAATACCCCTCC
ATTTCTTGGTCAACATGGATTTAACTTTTTTCCTGGTAATGCTGATTTCTCTACATGGGGGACAAGTGGA
TCTCAGGGACAATCAACACAAAGTTCTGCTTATAGTAGCAGTTATGGCTATCCACCTAGTTCTCTTGGGA
GAGCTATTACTGATGGACAGGCTGGATTTGGCAATGATACTTTGAGTAAGGTGCCTGGCATTAGCAGTAT
TGAGCAAGGCATGACTGGACTGAAAATTGGTGGTGACCTGACAGCTGCAGTGACAAAAACTGTAGGTACA
GCTTTGAGCAGCAGTGGTATGACTAGCATTGCAACCAATAGTGTGCCCCCAGTTAGCAGTGCAGCACCTA
AACCAACCTCCTGGGCTGCCATTGCCAGAAAGCCTGCCAAACCTCAACCGAAACTTAAACCCAAGGGCAA
TGTGGGAATTGGGGGTTCTGCTGTACCACCACCTCCTATAAAACACAACATGAATATTGGAACTTGGGAT
GAAAAAGGGTCAGTGGTAAAGGCTCCACCAACCCAACCAGTTCTGCCTCCTCAAACTATAATCCAGCAGC
CTCAGCCATTAATTCAACCACCACCATTGGTGCAAAGCCAACTGCCTCAACAGCAGCCTCAACCACCACA
ACCACAGCAGCAACAAGGACCTCAGCCACAGGCCCAGCCTCACCAAGTGCAGCCTCAACAGCAGCAGCTG
CAGAATCGCTGGGTAGCTCCTCGTAACAGGGGAGCAGGCTTCAACCAGAACAATGGAGCGGGCAGTGAAA
ACTTTGGTTTAGGTGTTGTACCTGTCAGTGCTTCACCTTCTAGTGTAGAAGTGCATCCCGTGCTGGAAAA
GCTAAAGGCCATAAACAACTATAATCCCAAAGACTTTGATTGGAATCTGAAGAATGGACGTGTGTTTATA
ATTAAAAGCTACTCTGAGGATGACATACATCGTTCCATTAAATACTCTATCTGGTGTAGTACTGAGCATG
GTAATAAGCGTTTGGATGCAGCTTACCGTTCCCTGAATGGGAAAGGCCCACTCTATTTACTCTTCAGTGT
GAATGGCAGTGGACATTTTTGTGGAGTGGCTGAAATGAAGTCTGTTGTGGACTATAATGCGTATGCTGGT
GTCTGGTCTCAGGATAAGTGGAAGGGCAAATTTGAAGTTAAATGGATCTTTGTCAAAGATGTTCCCAATA
ACCAATTACGGCATATTCGCTTAGAAAATAATGACAACAAACCGGTTACCAATTCAAGGGACACTCAAGA
GGTACCCCTAGAAAAAGCTAAGCAAGTGCTTAAAATAATTGCTACTTTCAAGCATACCACCTCAATCTTT
GATGACTTTGCACATTATGAAAAGCGTCAAGAAGAGGAGGAAGCCATGCGTAGGGAGAGAAATAGAAACA
AACAATAA

Translation (585 aa):
MSATSVDQRPKGQGNKVSVQNGSIHQKDAVNDDDFEPYLSSQTNQSNSYPPMSDPYMPSYYAPSIGFPYS
LGEAAWSTAGDQPMPYLTTYGQMSNGEHHYIPDGVFSQPGALGNTPPFLGQHGFNFFPGNADFSTWGTSG
SQGQSTQSSAYSSSYGYPPSSLGRAITDGQAGFGNDTLSKVPGISSIEQGMTGLKIGGDLTAAVTKTVGT
ALSSSGMTSIATNSVPPVSSAAPKPTSWAAIARKPAKPQPKLKPKGNVGIGGSAVPPPPIKHNMNIGTWD
EKGSVVKAPPTQPVLPPQTIIQQPQPLIQPPPLVQSQLPQQQPQPPQPQQQQGPQPQAQPHQVQPQQQQL
QNRWVAPRNRGAGFNQNNGAGSENFGLGVVPVSASPSSVEVHPVLEKLKAINNYNPKDFDWNLKNGRVFI
IKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFSVNGSGHFCGVAEMKSVVDYNAYAG
VWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIF
DDFAHYEKRQEEEEAMRRERNRNKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH