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Report for CCDS1569.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1569.1 Public Homo sapiens 1 GJC2 24 110 108 CCDS HistoryNCBI Gene:57165Re-query CCDS DB by CCDS ID:1569.1Re-query CCDS DB by GeneID:57165See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1569.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366714.3 ENSP00000355675.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000366714.3Link to Ensembl Protein Viewer:ENSP00000355675.2Re-query CCDS DB by Nucleotide ID:ENST00000366714Re-query CCDS DB by Protein ID:ENSP00000355675
Original member Current member NCBI NM_020435.4 NP_065168.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020435.4Link to Protein Sequence:NP_065168.2Re-query CCDS DB by Nucleotide ID:NM_020435Re-query CCDS DB by Protein ID:NP_065168Link to BLAST:NP_065168.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065168.2 439 Q5T442 439 100% 0 0

Chromosomal Locations for CCDS 1569.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 228157759 228159078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1320 nt):
ATGACCAACATGAGCTGGAGCTTCCTGACGCGGCTGCTGGAGGAGATCCACAACCACTCCACCTTCGTGG
GCAAGGTGTGGCTCACGGTGCTGGTGGTCTTCCGCATCGTGCTGACGGCTGTGGGCGGCGAGGCCATCTA
CTCGGACGAGCAGGCCAAGTTCACTTGCAACACGCGGCAGCCAGGCTGCGACAACGTCTGCTATGACGCC
TTCGCGCCCCTGTCGCACGTGCGCTTCTGGGTCTTCCAGATTGTGGTCATCTCCACGCCCTCGGTCATGT
ACCTGGGCTACGCCGTGCACCGCCTGGCCCGTGCGTCTGAGCAGGAGCGGCGCCGCGCCCTCCGCCGCCG
CCCGGGGCCACGCCGCGCGCCCCGAGCGCACCTGCCGCCCCCGCACGCCGGCTGGCCTGAGCCCGCCGAC
CTGGGCGAGGAGGAGCCCATGCTGGGCCTGGGCGAGGAGGAGGAGGAGGAGGAGACGGGGGCAGCCGAGG
GCGCCGGCGAGGAAGCGGAGGAGGCAGGCGCGGAGGAGGCGTGCACTAAGGCGGTCGGCGCTGACGGCAA
GGCGGCAGGGACCCCGGGCCCGACCGGGCAACACGATGGGCGGAGGCGCATCCAGCGGGAGGGCCTGATG
CGCGTGTACGTGGCCCAGCTGGTGGCCAGGGCAGCTTTCGAGGTGGCCTTCCTGGTGGGCCAGTACCTGC
TGTACGGCTTCGAGGTGCGACCGTTCTTTCCCTGCAGCCGCCAGCCCTGCCCGCACGTGGTGGACTGCTT
CGTGTCGCGCCCTACTGAAAAGACGGTCTTCCTGCTGGTTATGTACGTGGTCAGCTGCCTGTGCCTGCTG
CTCAACCTCTGTGAGATGGCCCACCTGGGCTTGGGCAGCGCGCAGGACGCGGTGCGCGGCCGCCGCGGCC
CCCCGGCCTCCGCCCCCGCCCCCGCGCCGCGGCCCCCGCCCTGCGCCTTCCCTGCGGCGGCCGCTGGCTT
GGCCTGCCCGCCCGACTACAGCCTGGTGGTGCGGGCGGCCGAGCGCGCTCGGGCGCATGACCAGAACCTG
GCAAACCTGGCCCTGCAGGCGCTGCGCGACGGGGCAGCGGCTGGGGACCGCGACCGGGACAGTTCGCCGT
GCGTCGGCCTCCCTGCGGCCTCCCGGGGGCCCCCCAGAGCAGGCGCCCCCGCGTCCCGGACGGGCAGTGC
TACCTCTGCGGGCACTGTCGGGGAGCAGGGCCGGCCCGGCACCCACGAGCGGCCAGGAGCCAAGCCCAGG
GCTGGCTCCGAGAAGGGCAGTGCCAGCAGCAGGGACGGGAAGACCACCGTGTGGATCTGA

Translation (439 aa):
MTNMSWSFLTRLLEEIHNHSTFVGKVWLTVLVVFRIVLTAVGGEAIYSDEQAKFTCNTRQPGCDNVCYDA
FAPLSHVRFWVFQIVVISTPSVMYLGYAVHRLARASEQERRRALRRRPGPRRAPRAHLPPPHAGWPEPAD
LGEEEPMLGLGEEEEEEETGAAEGAGEEAEEAGAEEACTKAVGADGKAAGTPGPTGQHDGRRRIQREGLM
RVYVAQLVARAAFEVAFLVGQYLLYGFEVRPFFPCSRQPCPHVVDCFVSRPTEKTVFLLVMYVVSCLCLL
LNLCEMAHLGLGSAQDAVRGRRGPPASAPAPAPRPPPCAFPAAAAGLACPPDYSLVVRAAERARAHDQNL
ANLALQALRDGAAAGDRDRDSSPCVGLPAASRGPPRAGAPASRTGSATSAGTVGEQGRPGTHERPGAKPR
AGSEKGSASSRDGKTTVWI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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