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Report for CCDS43720.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43720.1 Public Homo sapiens 8 PSD3 24 110 108 CCDS HistoryNCBI Gene:23362Re-query CCDS DB by CCDS ID:43720.1Re-query CCDS DB by GeneID:23362See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43720.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000327040.13 ENSP00000324127.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000327040.13Link to Ensembl Protein Viewer:ENSP00000324127.8Re-query CCDS DB by Nucleotide ID:ENST00000327040Re-query CCDS DB by Protein ID:ENSP00000324127
Original member Current member NCBI NM_015310.4 NP_056125.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015310.4Link to Protein Sequence:NP_056125.3Re-query CCDS DB by Nucleotide ID:NM_015310Re-query CCDS DB by Protein ID:NP_056125Link to BLAST:NP_056125.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056125.3 1047 Q9NYI0-2 1047 100% 0 0

Chromosomal Locations for CCDS 43720.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 18535743 18535958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18556209 18556352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18572528 18572672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18575128 18575285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18600364 18600434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18632613 18632806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18655642 18655685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18765449 18765538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18799295 18799353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18801270 18801382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18804522 18804602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18804704 18804898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18867674 18868069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18871626 18872733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18936034 18936142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19013563 19013583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3144 nt):
ATGGAAGGAAGGAGCGCAGCGGCAGAGACATTTGTTTGGGTGAACAATGCATCTGCACATTCCCAGAGTG
TTGCCAAGGCCAAATATGAATTTTTATTTGGCAGATCTGAAGGGAAAGCTCCAGATACTAGTGATCATGG
AGGAAGCACTTTACTCCCACCAAATGTCACAAATGAATTTCCAGAATATGGGACCATGGAGGAAGGTGGA
GAAGGCCTAAGGGCTTCTCTGGAATTTGATGGTGAGGCTCTGCCATGCCACCCACAAGAGCAGCAGGGTG
TCCAGCCTCTTACTGGCTGCCACTCTGGGCTCGACAGTGTTACAGAAGGACCAAAAGATGTCAGAGAGGC
CCCCTCTCAAAGTCATCTCAAGGAACAAAGTTTACAGCCCATTGACTCTTTGATTTCAGCTCTGAAAGCC
ACAGAAGCCAGAATCATTTCCGGAACATTACAGGCTACAAAGGTACTGGACCAAGATGCTGTTTCTAGTT
TTTCAGTTCAGCAGGTGGAAAAAGAGCTGGACACTGCCAGTCGTAAAACACAGAGAGTCAACAAAACGCT
CCCTGCTGGCCAAAAAAATTTACCAGAAATACCTCTTTCAGCTGAAGTAACAACGGAGGAAAGTTTTTAT
TTGAGCATCCAGAAAGATCTCACCGCGCTGTTAACTGGAGACACTCAGGCAGAGATTTCCCAGATAATGA
ATAATGGGAGGAAAGGGGCTGTCTGTGTGCAGGAGCCATCTTGTCCTTTGGCCTCCCTCGGGAGCTCAGC
AGTGACCTGCCACTCTGCAGGCAGTGTTGGTTTCTTGAAAGAGCAGAGGTCTGCTCTTGGGAGAGAGCAC
CCAGGGGGATGTGATCGAAGCAGCTCCATGGGACGCCCAGGCCGGGTCAAACATGTGGAATTTCAAGGAG
TGGAAATACTGTGGACAGGAGGAGACAAGAGAGAGACCCAGCATCCTATAGATTTTGAGACATCACTGCA
AAGAACAGCCTCTCCTGACAGCAAAGAGTCTTCCAAAGTGCCACGCCATCTCATCTCATCAGCTGGTTTG
TGTAATTCAAGTAGTTTAACTGAGAATGTTTGGGATGAATCCTGGAAAGCTCCTTCAGAGAGGCCTGGCA
CTAGCTCGGGGACATTTTCCCCTGTGCGTCTTGATGAGAGTGGAGAGGATGAAGTCTTCCTACAGGAAAA
CAAACAGCATCTTGAGAAGACACCTAAACCAGAGAGAGACAGGGAAAGGATCAGCGAACAAGAGGAGCAC
GTTAAGGGGGAAGATGAAGACATCCTTGGGCCTGGATATACGGAGGACTCCACCGACGTGTACAGCTCCC
AGTTTGAAACCATTTTGGACAACACTTCTTTATACTACAGTGCAGAGTCCCTGGAGACATTATACTCAGA
GCCTGATAGCTATTTTAGCTTTGAAATGCCCCTCACTCCAATGATACAACAGCGCATTAAAGAAGGTGGT
CAGTTCTTGGAGAGGACATCAGGGGGAGGACATCAGGATATCCTGAGTGTGTCTGCAGATGGTGGCATCG
TGATGGGCTATTCTAGTGGCGTCACCAATGGGCTGAATGATGCCAGCGACTCCATCTACACGAAAGGCAC
CCCGGAGATTGCTTTCTGGGGAAGCAATGCTGGGGTGAAAACAACACGGCTAGAAGCTCATTCTGAAATG
GGGAGCACTGAAATTTTGGAAAAGGAGACCCCAGAAAATCTCAGTAATGGTACCAGCAGCAATGTGGAAG
CAGCCAAAAGGTTGGCCAAACGCCTTTATCAGCTGGACAGATTCAAAAGATCAGATGTTGCAAAACACCT
TGGCAAGAACAACGAATTTAGCAAACTAGTTGCAGAAGAATATCTGAAGTTTTTTGATTTTACAGGAATG
ACGCTGGATCAGTCACTCAGGTATTTCTTTAAAGCATTCTCTCTTGTGGGAGAAACTCAAGAACGAGAGA
GAGTTTTAATACACTTCTCCAATAGATATTTTTATTGTAACCCAGATACCATTGCTTCACAAGATGGAGT
CCATTGCCTTACCTGTGCAATAATGCTTCTTAATACCGATCTACATGGCCACAATATTGGAAAGAAGATG
ACCTGTCAGGAGTTCATTGCAAATCTGCAAGGGGTAAATGAGGGTGTTGATTTCTCCAAGGATCTGCTGA
AAGCTCTGTACAACTCAATCAAGAATGAGAAGCTTGAATGGGCAGTAGATGATGAAGAGAAAAAAAAGTC
TCCCTCAGAAAGTACTGAGGAGAAAGCTAACGGAACACATCCAAAGACCATCAGTCGTATTGGAAGTACT
ACTAACCCATTTTTGGACATTCCTCATGATCCAAATGCTGCTGTGTACAAAAGTGGATTCTTGGCTCGGA
AAATTCATGCAGATATGGATGGAAAGAAGACTCCAAGAGGAAAACGAGGATGGAAAACCTTTTATGCTGT
ACTGAAGGGAACAGTTCTTTACTTGCAAAAGGATGAATACAAGCCAGAAAAGGCCTTGTCTGAAGAGGAC
TTGAAAAACGCTGTGAGTGTGCACCACGCATTGGCATCCAAGGCCACGGACTATGAGAAGAAACCAAACG
TGTTTAAACTTAAAACTGCCGACTGGAGGGTCTTGCTTTTTCAAACTCAGAGCCCAGAGGAAATGCAAGG
GTGGATAAACAAAATCAATTGTGTGGCAGCTGTATTTTCTGCACCACCATTTCCAGCAGCAATCGGCTCT
CAGAAGAAGTTTAGCCGCCCACTTCTGCCTGCCACTACAACAAAACTGTCTCAGGAGGAGCAACTGAAGT
CACATGAAAGTAAGCTGAAGCAGATCACCACCGAGCTGGCCGAGCACCGCTCATATCCCCCCGACAAGAA
GGTCAAAGCCAAGGACGTCGATGAGTACAAACTGAAAGACCACTATCTGGAGTTTGAGAAAACCCGCTAT
GAAATGTATGTCAGCATTCTCAAGGAAGGAGGCAAAGAGCTACTGAGTAACGATGAAAGCGAGGCTGCAG
GACTGAAGAAGTCGCACTCGAGTCCTTCGCTGAACCCGGATACTTCTCCAATCACTGCCAAAGTCAAGCG
TAACGTGTCAGAGAGGAAGGATCACCGACCTGAAACACCAAGCATTAAGCAAAAAGTTACTTAG

Translation (1047 aa):
MEGRSAAAETFVWVNNASAHSQSVAKAKYEFLFGRSEGKAPDTSDHGGSTLLPPNVTNEFPEYGTMEEGG
EGLRASLEFDGEALPCHPQEQQGVQPLTGCHSGLDSVTEGPKDVREAPSQSHLKEQSLQPIDSLISALKA
TEARIISGTLQATKVLDQDAVSSFSVQQVEKELDTASRKTQRVNKTLPAGQKNLPEIPLSAEVTTEESFY
LSIQKDLTALLTGDTQAEISQIMNNGRKGAVCVQEPSCPLASLGSSAVTCHSAGSVGFLKEQRSALGREH
PGGCDRSSSMGRPGRVKHVEFQGVEILWTGGDKRETQHPIDFETSLQRTASPDSKESSKVPRHLISSAGL
CNSSSLTENVWDESWKAPSERPGTSSGTFSPVRLDESGEDEVFLQENKQHLEKTPKPERDRERISEQEEH
VKGEDEDILGPGYTEDSTDVYSSQFETILDNTSLYYSAESLETLYSEPDSYFSFEMPLTPMIQQRIKEGG
QFLERTSGGGHQDILSVSADGGIVMGYSSGVTNGLNDASDSIYTKGTPEIAFWGSNAGVKTTRLEAHSEM
GSTEILEKETPENLSNGTSSNVEAAKRLAKRLYQLDRFKRSDVAKHLGKNNEFSKLVAEEYLKFFDFTGM
TLDQSLRYFFKAFSLVGETQERERVLIHFSNRYFYCNPDTIASQDGVHCLTCAIMLLNTDLHGHNIGKKM
TCQEFIANLQGVNEGVDFSKDLLKALYNSIKNEKLEWAVDDEEKKKSPSESTEEKANGTHPKTISRIGST
TNPFLDIPHDPNAAVYKSGFLARKIHADMDGKKTPRGKRGWKTFYAVLKGTVLYLQKDEYKPEKALSEED
LKNAVSVHHALASKATDYEKKPNVFKLKTADWRVLLFQTQSPEEMQGWINKINCVAAVFSAPPFPAAIGS
QKKFSRPLLPATTTKLSQEEQLKSHESKLKQITTELAEHRSYPPDKKVKAKDVDEYKLKDHYLEFEKTRY
EMYVSILKEGGKELLSNDESEAAGLKKSHSSPSLNPDTSPITAKVKRNVSERKDHRPETPSIKQKVT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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