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Report for CCDS2928.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2928.1 Public Homo sapiens 3 ARL6 24 110 108 CCDS HistoryNCBI Gene:84100Re-query CCDS DB by CCDS ID:2928.1Re-query CCDS DB by GeneID:84100See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2928.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335979.6 ENSP00000337722.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000335979.6Link to Ensembl Protein Viewer:ENSP00000337722.2Re-query CCDS DB by Nucleotide ID:ENST00000335979Re-query CCDS DB by Protein ID:ENSP00000337722
Original member Current member EBI ENST00000493990.5 ENSP00000418057.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000493990.5Link to Ensembl Protein Viewer:ENSP00000418057.1Re-query CCDS DB by Nucleotide ID:ENST00000493990Re-query CCDS DB by Protein ID:ENSP00000418057
Original member Current member EBI ENST00000462412.3 ENSP00000418740.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000462412.3Link to Ensembl Protein Viewer:ENSP00000418740.2Re-query CCDS DB by Nucleotide ID:ENST00000462412Re-query CCDS DB by Protein ID:ENSP00000418740
Original member Current member EBI ENST00000463745.6 ENSP00000419619.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000463745.6Link to Ensembl Protein Viewer:ENSP00000419619.1Re-query CCDS DB by Nucleotide ID:ENST00000463745Re-query CCDS DB by Protein ID:ENSP00000419619
Original member Current member NCBI NM_001278293.3 NP_001265222.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001278293.3Link to Protein Sequence:NP_001265222.1Re-query CCDS DB by Nucleotide ID:NM_001278293Re-query CCDS DB by Protein ID:NP_001265222Link to BLAST:NP_001265222.1
Original member Current member NCBI NM_032146.5 NP_115522.1 Accepted alive Link to Nucleotide Sequence:NM_032146.5Link to Protein Sequence:NP_115522.1Re-query CCDS DB by Nucleotide ID:NM_032146Re-query CCDS DB by Protein ID:NP_115522Link to BLAST:NP_115522.1
Original member Current member NCBI NM_177976.3 NP_816931.1 Accepted alive Link to Nucleotide Sequence:NM_177976.3Link to Protein Sequence:NP_816931.1Re-query CCDS DB by Nucleotide ID:NM_177976Re-query CCDS DB by Protein ID:NP_816931Link to BLAST:NP_816931.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265222.1 186 Q9H0F7-1 186 100% 0 0
NP_115522.1 186 Q9H0F7-1 186 100% 0 0
NP_816931.1 186 Q9H0F7-1 186 100% 0 0

Chromosomal Locations for CCDS 2928.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 97768108 97768230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97780159 97780220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97780615 97780683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97784955 97785049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97787990 97788119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97791771 97791826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97798024 97798049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (561 nt):
ATGGGATTGCTAGACAGACTTTCAGTCTTGCTTGGCCTGAAGAAGAAGGAGGTTCATGTTTTGTGCCTTG
GGCTAGATAATAGTGGCAAAACGACGATCATTAACAAACTTAAACCTTCAAATGCTCAATCTCAAAATAT
CCTTCCAACAATAGGATTCAGCATAGAGAAATTCAAATCATCCAGTTTGTCATTTACAGTGTTTGACATG
TCAGGTCAAGGAAGATACAGAAATCTCTGGGAACACTATTATAAAGAAGGCCAAGCTATTATTTTTGTCA
TTGATAGTAGTGATAGATTAAGAATGGTTGTGGCCAAAGAAGAACTCGATACTCTTCTGAATCATCCAGA
TATTAAACACCGTCGAATTCCAATCTTATTCTTTGCAAATAAAATGGATCTTAGAGATGCAGTGACATCT
GTAAAAGTGTCTCAGTTGCTGTGTTTAGAGAACATCAAAGATAAACCCTGGCATATTTGTGCTAGTGATG
CCATAAAAGGAGAAGGCTTGCAAGAAGGTGTAGACTGGCTTCAAGATCAGATCCAGACTGTGAAGACATG
A

Translation (186 aa):
MGLLDRLSVLLGLKKKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDM
SGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTS
VKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQTVKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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