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Report for CCDS10700.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10700.1 Public Homo sapiens 16 STX4 24 110 108 CCDS HistoryNCBI Gene:6810Re-query CCDS DB by CCDS ID:10700.1Re-query CCDS DB by GeneID:6810See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10700.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000313843.8 ENSP00000317714.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000313843.8Link to Ensembl Protein Viewer:ENSP00000317714.3Re-query CCDS DB by Nucleotide ID:ENST00000313843Re-query CCDS DB by Protein ID:ENSP00000317714
Original member Current member NCBI NM_004604.5 NP_004595.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004604.5Link to Protein Sequence:NP_004595.2Re-query CCDS DB by Nucleotide ID:NM_004604Re-query CCDS DB by Protein ID:NP_004595Link to BLAST:NP_004595.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004595.2 297 Q12846-1 297 100% 0 0

Chromosomal Locations for CCDS 10700.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 31033806 31033835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31034013 31034114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31034226 31034325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31034462 31034536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31034970 31035040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31037926 31038034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31038114 31038190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31038510 31038647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31039541 31039651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31039723 31039803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGCGGGACAGGACCCACGAGCTGAGACAGGGGGATGACAGCTCGGACGAAGAGGACAAGGAGCGGGTCG
CGCTGGTGGTGCACCCGGGCACGGCACGGCTGGGGAGCCCGGACGAGGAGTTCTTCCACAAGGTCCGGAC
AATTCGGCAGACTATTGTCAAACTGGGGAATAAAGTCCAGGAGTTGGAGAAACAGCAGGTCACCATCCTG
GCCACGCCCCTTCCCGAGGAGAGCATGAAGCAGGAGCTGCAGAACCTGCGCGATGAGATCAAACAGCTGG
GGAGGGAGATCCGCCTGCAGCTGAAGGCCATAGAGCCCCAGAAGGAGGAAGCTGATGAGAACTATAACTC
CGTCAACACAAGAATGAGAAAAACCCAGCATGGGGTCCTGTCCCAGCAATTCGTGGAGCTCATCAACAAG
TGCAATTCAATGCAGTCCGAATACCGGGAGAAGAACGTGGAGCGGATTCGGAGGCAGCTGAAGATCACCA
ATGCTGGGATGGTGTCTGATGAGGAGTTGGAGCAGATGCTGGACAGTGGGCAAAGCGAGGTGTTTGTGTC
CAATATCCTGAAGGACACGCAGGTGACTCGACAGGCCTTAAATGAGATCTCGGCCCGGCACAGTGAGATC
CAGCAGCTTGAACGCAGTATTCGTGAGCTGCACGACATATTCACTTTTCTGGCTACCGAAGTGGAGATGC
AGGGGGAGATGATCAATCGGATTGAGAAGAACATCCTGAGCTCAGCGGACTACGTGGAACGTGGGCAGGA
GCACGTCAAGACGGCCCTGGAGAACCAGAAGAAGGCGAGGAAGAAGAAAGTCTTGATTGCCATCTGTGTG
TCCATCACCGTCGTCCTCCTAGCAGTCATCATTGGCGTCACAGTGGTTGGATAA

Translation (297 aa):
MRDRTHELRQGDDSSDEEDKERVALVVHPGTARLGSPDEEFFHKVRTIRQTIVKLGNKVQELEKQQVTIL
ATPLPEESMKQELQNLRDEIKQLGREIRLQLKAIEPQKEEADENYNSVNTRMRKTQHGVLSQQFVELINK
CNSMQSEYREKNVERIRRQLKITNAGMVSDEELEQMLDSGQSEVFVSNILKDTQVTRQALNEISARHSEI
QQLERSIRELHDIFTFLATEVEMQGEMINRIEKNILSSADYVERGQEHVKTALENQKKARKKKVLIAICV
SITVVLLAVIIGVTVVG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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