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Report for CCDS5886.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5886.1 Public Homo sapiens 7 TCAF1 24 110 108 CCDS HistoryNCBI Gene:9747Re-query CCDS DB by CCDS ID:5886.1Re-query CCDS DB by GeneID:9747See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5886.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000479870.6 ENSP00000419235.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000479870.6Link to Ensembl Protein Viewer:ENSP00000419235.1Re-query CCDS DB by Nucleotide ID:ENST00000479870Re-query CCDS DB by Protein ID:ENSP00000419235
Original member Current member NCBI NM_014719.3 NP_055534.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014719.3Link to Protein Sequence:NP_055534.2Re-query CCDS DB by Nucleotide ID:NM_014719Re-query CCDS DB by Protein ID:NP_055534Link to BLAST:NP_055534.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055534.2 921 Q9Y4C2-1 921 100% 0 0

Chromosomal Locations for CCDS 5886.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 143854133 143854142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143857100 143857350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143858824 143859161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143860208 143860447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143861095 143861308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143862416 143862513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143862802 143863796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143875989 143876608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2766 nt):
ATGGCGACTCCCTCTGCTGCCTTCGAGGCCCTTATGAATGGTGTGACAAGCTGGGATGTACCCGAAGATG
CTGTTCCATGTGAACTGCTTCTTATTGGAGAGGCTTCATTTCCTGTGATGGTGAATGACATGGGCCAGGT
CCTCATTGCTGCCTCCTCCTATGGCCGTGGCCGCCTGGTGGTCGTGTCCCATGAGGACTACTTGGTGGAA
GCCCAGCTCACGCCCTTTCTCCTGAACGCAGTGGGGTGGCTTTGCTCTTCCCCTGGGGCTCCCATTGGTG
TACACCCATCCCTGGCACCTTTGGCCAAAATCCTCGAGGGCTCTGGAGTGGATGCAAAGGTTGAGCCAGA
AGTGAAAGACTCCCTGGGGGTTTACTGTATTGATGCCTACAATGAAACCATGACAGAAAAGCTGGTCAAG
TTCATGAAATGTGGTGGCGGCTTGCTCATAGGAGGACAAGCCTGGGATTGGGCCAACCAGGGGGAGGATG
AAAGGGTTCTGTTCACGTTCCCTGGGAACCTCGTGACCAGTGTGGCTGGCATTTACTTTACTGACAACAA
AGGGGACACGAGTTTCTTTAAAGTCTCCAAGAAGATGCCCAAGATCCCAGTGTTGGTTAGTTGTGAAGAT
GACCTCTCCGACGACAGAGAAGAGCTTCTGCATGGGATTTCAGAGCTGGACATCAGCAACTCGGATTGTT
TCCCATCCCAGCTGCTAGTGCATGGGGCTTTAGCCTTTCCTCTAGGGTTAGATTCCTACCATGGCTGTGT
TATAGCGGCTGCCCGCTATGGCCGGGGCCGGGTGGTTGTGACTGGCCATAAGGTATTATTCACTGTTGGT
AAACTGGGCCCCTTTCTGCTCAATGCTGTCCGCTGGCTGGATGGGGGCCGCAGAGGCAAGGTTGTGGTGC
AGACAGAGCTGAGAACCCTGAGTGGCCTCCTCGCAGTGGGGGGCATAGACACCAGCATCGAGCCCAATCT
GACCAGTGATGCAAGTGTCTACTGCTTTGAACCCGTGAGTGAAGTGGGGGTCAAGGAACTGCAGGAGTTT
GTAGCAGAGGGTGGCGGGCTATTTGTTGGAGCCCAAGCCTGGTGGTGGGCCTTCAAGAACCCCGGAGTGT
CCCCTTTGGCTCGATTCCCAGGAAACCTCCTCCTCAACCCCTTTGGCATCAGCATTACAAGCCAAAGCCT
CAATCCAGGGCCCTTTCGTACTCCTAAAGCAGGGATAAGGACCTATCACTTCCGCTCCACCTTGGCCGAG
TTCCAGGTTATAATGGGCAGGAAGAGAGGAAATGTGGAAAAGGGCTGGTTGGCAAAGCTGGGACCAGATG
GTGCAGCTTTCCTGCAGATTCCCGCAGAAGAGATCCCTGCCTACATGTCTGTGCATCGACTCCTGAGGAA
GCTGCTAAGTCGATATCGGCTTCCAGTAGCAACCCGAGAGAACCCTGTTATCAATGACTGCTGCAGAGGT
GCTATGCTTTCCCTGGCCACAGGGCTGGCCCACTCTGGAAGCGACCTCTCTCTGTTAGTCCCAGAAATTG
AAGATATGTACAGCAGCCCCTATCTGCGCCCCTCAGAATCTCCTATCACCGTCGAGGTCAACTGCACCAA
TCCAGGCACCAGATATTGCTGGATGAGTACTGGGCTCTACATACCTGGAAGGCAAATTATAGAAGTCTCA
CTGCCTGAAGCTGCTGCCTCTGCCGACCTGAAGATACAGATTGGCTGCCACACAGATGACCTGACCAGGG
CCAGCAAGCTTTTCCGAGGCCCACTCGTAATTAACCGGTGCTGCTTGGACAAACCCACAAAATCGATCAC
GTGCCTCTGGGGTGGACTCCTCTATATAATTGTGCCTCAGAACAGCAAACTGGGTTCTGTGCCTGTCACC
GTGAAGGGGGCTGTGCATGCTCCATACTACAAGCTGGGGGAGACCACCCTGGAGGAGTGGAAGAGGCGTA
TCCAGGAGAATCCAGGGCCCTGGGGAGAGCTGGCCACGGACAACATCATTCTGACCGTGCCGACCGCAAA
TCTTCGTACTCTGGAGAACCCTGAGCCGCTGCTCCGCCTCTGGGATGAGGTGATGCAGGCTGTGGCGCGA
CTGGGAGCTGAGCCCTTCCCTTTGCGCCTGCCTCAGAGGATTGTTGCCGACGTGCAGATCTCAGTGGGCT
GGATGCATGCAGGGTACCCCATCATGTGCCATCTGGAGTCAGTGCAGGAGCTCATCAACGAGAAGCTCAT
CAGAACCAAGGGGCTGTGGGGCCCCGTCCATGAGCTGGGCCGCAACCAGCAGCGGCAGGAGTGGGAGTTC
CCACCACACACCACCGAGGCCACCTGCAACCTGTGGTGTGTGTATGTGCATGAGACGGTCTTGGGCATTC
CTCGAAGCCGTGCCAATATTGCTCTGTGGCCCCCAGTTCGGGAGAAGAGAGTCAGAATCTACCTGAGCAA
GGGTCCCAATGTGAAAAACTGGAATGCATGGACCGCACTGGAAACGTATTTACAGCTCCAGGAAGCCTTT
GGTTGGGAGCCATTCATCCGTCTCTTCACCGAGTACAGGAACCAGACCAACTTGCCCACAGAAAATGTTG
ACAAAATGAATCTGTGGGTCAAGATGTTCTCCCACCAAGTGCAGAAGAACCTGGCTCCGTTCTTTGAGGC
CTGGGCCTGGCCCATCCAGAAGGAAGTGGCTACCAGCCTGGCCTATCTGCCTGAATGGAAGGAAAATATT
ATGAAATTGTACCTCCTCACACAGATGCCCCACTGA

Translation (921 aa):
MATPSAAFEALMNGVTSWDVPEDAVPCELLLIGEASFPVMVNDMGQVLIAASSYGRGRLVVVSHEDYLVE
AQLTPFLLNAVGWLCSSPGAPIGVHPSLAPLAKILEGSGVDAKVEPEVKDSLGVYCIDAYNETMTEKLVK
FMKCGGGLLIGGQAWDWANQGEDERVLFTFPGNLVTSVAGIYFTDNKGDTSFFKVSKKMPKIPVLVSCED
DLSDDREELLHGISELDISNSDCFPSQLLVHGALAFPLGLDSYHGCVIAAARYGRGRVVVTGHKVLFTVG
KLGPFLLNAVRWLDGGRRGKVVVQTELRTLSGLLAVGGIDTSIEPNLTSDASVYCFEPVSEVGVKELQEF
VAEGGGLFVGAQAWWWAFKNPGVSPLARFPGNLLLNPFGISITSQSLNPGPFRTPKAGIRTYHFRSTLAE
FQVIMGRKRGNVEKGWLAKLGPDGAAFLQIPAEEIPAYMSVHRLLRKLLSRYRLPVATRENPVINDCCRG
AMLSLATGLAHSGSDLSLLVPEIEDMYSSPYLRPSESPITVEVNCTNPGTRYCWMSTGLYIPGRQIIEVS
LPEAAASADLKIQIGCHTDDLTRASKLFRGPLVINRCCLDKPTKSITCLWGGLLYIIVPQNSKLGSVPVT
VKGAVHAPYYKLGETTLEEWKRRIQENPGPWGELATDNIILTVPTANLRTLENPEPLLRLWDEVMQAVAR
LGAEPFPLRLPQRIVADVQISVGWMHAGYPIMCHLESVQELINEKLIRTKGLWGPVHELGRNQQRQEWEF
PPHTTEATCNLWCVYVHETVLGIPRSRANIALWPPVREKRVRIYLSKGPNVKNWNAWTALETYLQLQEAF
GWEPFIRLFTEYRNQTNLPTENVDKMNLWVKMFSHQVQKNLAPFFEAWAWPIQKEVATSLAYLPEWKENI
MKLYLLTQMPH


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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