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Report for CCDS1271.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1271.1 Public Homo sapiens 1 SFT2D2 24 110 108 CCDS HistoryNCBI Gene:375035Re-query CCDS DB by CCDS ID:1271.1Re-query CCDS DB by GeneID:375035See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1271.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000271375.7 ENSP00000271375.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000271375.7Link to Ensembl Protein Viewer:ENSP00000271375.3Re-query CCDS DB by Nucleotide ID:ENST00000271375Re-query CCDS DB by Protein ID:ENSP00000271375
Original member Current member NCBI NM_199344.3 NP_955376.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_199344.3Link to Protein Sequence:NP_955376.1Re-query CCDS DB by Nucleotide ID:NM_199344Re-query CCDS DB by Protein ID:NP_955376Link to BLAST:NP_955376.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_955376.1 160 O95562 160 100% 0 0

Chromosomal Locations for CCDS 1271.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 168226080 168226142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168231514 168231600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168231834 168231919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168235101 168235182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168236589 168236624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168236712 168236770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168239131 168239160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168242501 168242540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (483 nt):
ATGGACAAGCTGAAGAAGGTGCTGAGCGGGCAGGACACGGAGGACCGGAGCGGCCTGTCCGAGGTTGTTG
AGGCATCTTCATTAAGCTGGAGTACCAGGATAAAAGGCTTCATTGCGTGTTTTGCTATAGGAATTCTCTG
CTCACTGCTGGGTACTGTTCTGCTGTGGGTGCCCAGGAAGGGACTACACCTCTTCGCAGTGTTTTATACC
TTTGGTAATATCGCATCAATTGGGAGTACCATCTTCCTCATGGGACCAGTGAAACAGCTGAAGCGAATGT
TTGAGCCTACTCGTTTGATTGCAACTATCATGGTGCTGTTGTGTTTTGCACTTACCCTGTGTTCTGCCTT
TTGGTGGCATAACAAGGGACTTGCACTTATCTTCTGCATTTTGCAGTCTTTGGCATTGACGTGGTACAGC
CTTTCCTTCATACCATTTGCAAGGGATGCTGTGAAGAAGTGTTTTGCCGTGTGTCTTGCATAA

Translation (160 aa):
MDKLKKVLSGQDTEDRSGLSEVVEASSLSWSTRIKGFIACFAIGILCSLLGTVLLWVPRKGLHLFAVFYT
FGNIASIGSTIFLMGPVKQLKRMFEPTRLIATIMVLLCFALTLCSAFWWHNKGLALIFCILQSLALTWYS
LSFIPFARDAVKKCFAVCLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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