NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8611.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8611.1 Public Homo sapiens 12 CLEC9A 24 110 108 CCDS HistoryNCBI Gene:283420Re-query CCDS DB by CCDS ID:8611.1Re-query CCDS DB by GeneID:283420See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8611.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355819.6 ENSP00000348074.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000355819.6Link to Ensembl Protein Viewer:ENSP00000348074.1Re-query CCDS DB by Nucleotide ID:ENST00000355819Re-query CCDS DB by Protein ID:ENSP00000348074
Original member Current member NCBI NM_207345.4 NP_997228.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_207345.4Link to Protein Sequence:NP_997228.1Re-query CCDS DB by Nucleotide ID:NM_207345Re-query CCDS DB by Protein ID:NP_997228Link to BLAST:NP_997228.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997228.1 241 Q6UXN8 241 100% 0 0

Chromosomal Locations for CCDS 8611.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 10052688 10052778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 10054271 10054351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 10061127 10061273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 10063055 10063206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 10064732 10064853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 10065500 10065632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (726 nt):
ATGCACGAGGAAGAAATATACACCTCTCTTCAGTGGGATAGCCCAGCACCAGACACTTACCAGAAATGTC
TGTCTTCCAACAAATGTTCAGGAGCATGCTGTCTTGTGATGGTGATTTCATGTGTTTTCTGCATGGGATT
ATTAACAGCATCCATTTTCTTGGGCGTCAAGTTGTTGCAGGTGTCCACCATTGCGATGCAGCAGCAAGAA
AAACTCATCCAACAAGAGAGGGCACTGCTAAACTTTACAGAATGGAAGAGAAGCTGTGCCCTTCAGATGA
AATATTGCCAAGCCTTCATGCAAAACTCATTAAGTTCAGCCCATAACAGCAGTCCTTGTCCAAACAATTG
GATTCAGAACAGAGAAAGTTGTTACTATGTCTCTGAAATTTGGAGCATTTGGCACACCAGTCAAGAGAAT
TGTTTAAAGGAAGGTTCCACGCTGCTACAAATAGAGAGCAAAGAAGAAATGGATTTTATCACTGGCAGCT
TGAGGAAGATTAAAGGAAGCTATGATTACTGGGTGGGGTTGTCTCAGGATGGACACAGCGGACGCTGGCT
TTGGCAAGATGGCTCCTCTCCTTCTCCTGGCCTGTTGCCAGCAGAGAGATCCCAGTCAGCTAACCAAGTC
TGTGGATACGTGAAAAGCAATTCCCTTCTTTCGTCTAACTGCAGCACGTGGAAGTATTTTATCTGTGAGA
AGTATGCGTTGAGATCCTCTGTCTGA

Translation (241 aa):
MHEEEIYTSLQWDSPAPDTYQKCLSSNKCSGACCLVMVISCVFCMGLLTASIFLGVKLLQVSTIAMQQQE
KLIQQERALLNFTEWKRSCALQMKYCQAFMQNSLSSAHNSSPCPNNWIQNRESCYYVSEIWSIWHTSQEN
CLKEGSTLLQIESKEEMDFITGSLRKIKGSYDYWVGLSQDGHSGRWLWQDGSSPSPGLLPAERSQSANQV
CGYVKSNSLLSSNCSTWKYFICEKYALRSSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH