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Report for CCDS6788.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6788.1 Public Homo sapiens 9 SLC31A2 24 110 108 CCDS HistoryNCBI Gene:1318Re-query CCDS DB by CCDS ID:6788.1Re-query CCDS DB by GeneID:1318See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 6788.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000259392.8 ENSP00000259392.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000259392.8Link to Ensembl Protein Viewer:ENSP00000259392.3Re-query CCDS DB by Nucleotide ID:ENST00000259392Re-query CCDS DB by Protein ID:ENSP00000259392
Original member Current member NCBI NM_001860.3 NP_001851.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001860.3Link to Protein Sequence:NP_001851.1Re-query CCDS DB by Nucleotide ID:NM_001860Re-query CCDS DB by Protein ID:NP_001851Link to BLAST:NP_001851.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001851.1 143 O15432 143 100% 0 0

Chromosomal Locations for CCDS 6788.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 113151075 113151080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113157727 113157793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113161509 113161698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113162749 113162917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (432 nt):
ATGGCGATGCATTTCATCTTCTCAGATACAGCGGTGCTTCTGTTTGATTTCTGGAGTGTCCACAGTCCTG
CTGGCATGGCCCTTTCGGTGTTGGTGCTCCTGCTTCTGGCTGTACTGTATGAAGGCATCAAGGTTGGCAA
AGCCAAGCTGCTCAACCAGGTACTGGTGAACCTGCCAACCTCCATCAGCCAGCAGACCATCGCAGAGACA
GACGGGGACTCTGCAGGCTCAGATTCATTCCCTGTTGGCAGAACCCACCACAGGTGGTATTTGTGTCACT
TTGGCCAGTCTCTAATCCATGTCATCCAGGTGGTCATCGGCTACTTCATCATGCTGGCCGTAATGTCCTA
CAACACCTGGATTTTCCTTGGTGTGGTCTTGGGCTCTGCTGTGGGCTACTACCTAGCTTACCCACTTCTC
AGCACAGCTTAG

Translation (143 aa):
MAMHFIFSDTAVLLFDFWSVHSPAGMALSVLVLLLLAVLYEGIKVGKAKLLNQVLVNLPTSISQQTIAET
DGDSAGSDSFPVGRTHHRWYLCHFGQSLIHVIQVVIGYFIMLAVMSYNTWIFLGVVLGSAVGYYLAYPLL
STA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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