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Report for CCDS753.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
753.1 Public Homo sapiens 1 TLCD4 24 110 108 CCDS HistoryNCBI Gene:148534Re-query CCDS DB by CCDS ID:753.1Re-query CCDS DB by GeneID:148534See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 753.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370203.9 ENSP00000359222.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370203.9Link to Ensembl Protein Viewer:ENSP00000359222.4Re-query CCDS DB by Nucleotide ID:ENST00000370203Re-query CCDS DB by Protein ID:ENSP00000359222
Original member Current member NCBI NM_001199679.2 NP_001186608.1 Accepted alive Link to Nucleotide Sequence:NM_001199679.2Link to Protein Sequence:NP_001186608.1Re-query CCDS DB by Nucleotide ID:NM_001199679Re-query CCDS DB by Protein ID:NP_001186608Link to BLAST:NP_001186608.1
Original member Current member NCBI NM_152487.3 NP_689700.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152487.3Link to Protein Sequence:NP_689700.1Re-query CCDS DB by Nucleotide ID:NM_152487Re-query CCDS DB by Protein ID:NP_689700Link to BLAST:NP_689700.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186608.1 263 Q96MV1 263 100% 0 0
NP_689700.1 263 Q96MV1 263 100% 0 0

Chromosomal Locations for CCDS 753.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 95143902 95144056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 95148702 95148791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 95150208 95150266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 95151325 95151419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 95173816 95173889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 95191550 95191868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (792 nt):
ATGGAGATCAACACAAAACTGCTCATCAGTGTTACCTGTATCAGCTTTTTCACCTTTCAGCTTCTTTTCT
ACTTTGTAAGTTACTGGTTTTCAGCAAAAGTTTCTCCAGGTTTCAATAGTCTCAGCTTCAAAAAGAAGAT
TGAATGGAACTCAAGGGTAGTATCCACATGCCATTCTTTGGTGGTTGGTATTTTTGGCCTGTACATTTTC
TTATTCGATGAGGCTACTAAAGCTGATCCACTTTGGGGTGGTCCATCACTTGCAAACGTGAATATTGCTA
TTGCCTCAGGCTACCTCATTTCTGATTTGTCCATTATAATTTTGTATTGGAAAGTGATTGGTGACAAATT
TTTTATAATGCATCATTGTGCGTCCCTGTATGCATACTACCTTGTACTGAAAAATGGAGTGCTGGCATAC
ATTGGGAATTTTCGCCTGCTTGCAGAGCTTTCCAGCCCGTTTGTGAATCAGCGGTGGTTCTTTGAAGCTC
TGAAGTATCCCAAGTTTTCTAAAGCTATCGTTATCAATGGAATACTCATGACAGTAGTATTCTTCATCGT
GCGGATTGCCTCAATGCTTCCTCATTATGGCTTCATGTATTCCGTGTATGGAACAGAACCCTACATAAGG
CTTGGAGTTTTAATCCAGTTATCCTGGGTCATTAGTTGTGTTGTTTTGGATGTGATGAATGTCATGTGGA
TGATCAAAATTTCAAAAGGTTGCATCAAAGTCATCTCTCACATCAGACAAGAGAAAGCCAAAAATAGTCT
TCAGAATGGAAAACTTGATTAA

Translation (263 aa):
MEINTKLLISVTCISFFTFQLLFYFVSYWFSAKVSPGFNSLSFKKKIEWNSRVVSTCHSLVVGIFGLYIF
LFDEATKADPLWGGPSLANVNIAIASGYLISDLSIIILYWKVIGDKFFIMHHCASLYAYYLVLKNGVLAY
IGNFRLLAELSSPFVNQRWFFEALKYPKFSKAIVINGILMTVVFFIVRIASMLPHYGFMYSVYGTEPYIR
LGVLIQLSWVISCVVLDVMNVMWMIKISKGCIKVISHIRQEKAKNSLQNGKLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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