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Report for CCDS34065.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34065.1 Public Homo sapiens 4 RNF150 24 110 108 CCDS HistoryNCBI Gene:57484Re-query CCDS DB by CCDS ID:34065.1Re-query CCDS DB by GeneID:57484See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34065.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000515673.7 ENSP00000425840.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000515673.7Link to Ensembl Protein Viewer:ENSP00000425840.1Re-query CCDS DB by Nucleotide ID:ENST00000515673Re-query CCDS DB by Protein ID:ENSP00000425840
Original member Current member NCBI NM_020724.2 NP_065775.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020724.2Link to Protein Sequence:NP_065775.1Re-query CCDS DB by Nucleotide ID:NM_020724Re-query CCDS DB by Protein ID:NP_065775Link to BLAST:NP_065775.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065775.1 438 Q9ULK6-1 438 100% 0 0

Chromosomal Locations for CCDS 34065.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 140868261 140868379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140911144 140911354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140925977 140926073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140947654 140947736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140949301 140949372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140967623 140967873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141132325 141132808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1317 nt):
ATGGCAATGTCTCTCATCCAAGCGTGCTGCAGTCTGGCTCTCTCAACATGGCTGCTTTCCTTTTGTTTCG
TGCATCTGCTCTGCCTGGACTTTACCGTGGCCGAGAAGGAGGAATGGTACACCGCCTTCGTGAACATCAC
CTACGCCGAGCCCGCGCCGGACCCCGGGGCCGGGGCGGCGGGCGGCGGCGGCGCGGAGCTGCACACGGAG
AAGACGGAGTGCGGGCGCTACGGAGAGCACTCGCCCAAGCAGGACGCCCGCGGGGAGGTGGTCATGGCCA
GCTCGGCCCACGACCGCCTGGCCTGCGACCCCAACACCAAGTTCGCCGCCCCGACCCGCGGCAAGAACTG
GATAGCCCTCATCCCCAAGGGCAACTGCACGTACAGGGATAAGATCCGGAACGCGTTCCTGCAGAACGCC
TCAGCCGTGGTCATCTTCAACGTGGGCTCCAACACCAACGAGACCATCACCATGCCCCACGCGGGTGTAG
AAGACATCGTGGCCATAATGATTCCTGAGCCAAAAGGGAAGGAGATAGTAAGCCTGCTGGAAAGAAACAT
CACCGTGACAATGTACATCACCATCGGAACCCGGAACTTGCAGAAATATGTGAGCCGCACTTCGGTTGTG
TTTGTCTCCATCTCCTTCATTGTCCTGATGATCATTTCCCTCGCATGGCTCGTCTTTTATTACATCCAGA
GGTTTCGATATGCAAATGCCAGGGATAGGAACCAGCGCCGACTGGGGGATGCAGCAAAGAAAGCCATCAG
CAAACTCCAGATCAGGACCATCAAGAAGGGTGACAAGGAAACAGAGTCTGATTTTGACAACTGTGCAGTT
TGTATTGAAGGGTACAAGCCCAATGACGTTGTCCGGATCCTGCCCTGCCGGCATCTTTTCCACAAGTCCT
GTGTTGACCCCTGGCTTCTAGACCATCGTACCTGTCCCATGTGCAAGATGAACATTCTTAAAGCCCTAGG
GATCCCGCCCAATGCCGACTGCATGGACGACTTGCCCACTGACTTCGAGGGCTCTCTGGGAGGTCCACCC
ACCAACCAGATCACAGGTGCCAGCGACACAACAGTGAATGAAAGTTCAGTCACTTTGGACCCTGCTGTCC
GGACTGTGGGAGCCTTGCAGGTGGTCCAGGATACAGACCCCATCCCCCAGGAGGGAGACGTCATCTTTAC
TACTAACAGTGAGCAGGAGCCAGCTGTAAGCAGTGATTCTGACATTTCCTTGATCATGGCAATGGAGGTT
GGACTGTCTGATGTAGAACTTTCCACTGACCAGGACTGTGAAGAAGTGAAATCTTGA

Translation (438 aa):
MAMSLIQACCSLALSTWLLSFCFVHLLCLDFTVAEKEEWYTAFVNITYAEPAPDPGAGAAGGGGAELHTE
KTECGRYGEHSPKQDARGEVVMASSAHDRLACDPNTKFAAPTRGKNWIALIPKGNCTYRDKIRNAFLQNA
SAVVIFNVGSNTNETITMPHAGVEDIVAIMIPEPKGKEIVSLLERNITVTMYITIGTRNLQKYVSRTSVV
FVSISFIVLMIISLAWLVFYYIQRFRYANARDRNQRRLGDAAKKAISKLQIRTIKKGDKETESDFDNCAV
CIEGYKPNDVVRILPCRHLFHKSCVDPWLLDHRTCPMCKMNILKALGIPPNADCMDDLPTDFEGSLGGPP
TNQITGASDTTVNESSVTLDPAVRTVGALQVVQDTDPIPQEGDVIFTTNSEQEPAVSSDSDISLIMAMEV
GLSDVELSTDQDCEEVKS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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