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Report for CCDS54459.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54459.1 Public Homo sapiens 20 MTCL2 24 110 108 CCDS HistoryNCBI Gene:140710Re-query CCDS DB by CCDS ID:54459.1Re-query CCDS DB by GeneID:140710See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54459.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000237536.9 ENSP00000237536.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000237536.9Link to Ensembl Protein Viewer:ENSP00000237536.4Re-query CCDS DB by Nucleotide ID:ENST00000237536Re-query CCDS DB by Protein ID:ENSP00000237536
Original member Current member NCBI NM_080627.4 NP_542194.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080627.4Link to Protein Sequence:NP_542194.2Re-query CCDS DB by Nucleotide ID:NM_080627Re-query CCDS DB by Protein ID:NP_542194Link to BLAST:NP_542194.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542194.2 1661 O94964-2 1661 100% 0 0

Chromosomal Locations for CCDS 54459.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 36786485 36786637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36793249 36794599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36796882 36796952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36797502 36797573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36802856 36803107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36804735 36804902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36805853 36805957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36808513 36808743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36809982 36810107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36812704 36812844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36815126 36816307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36817407 36817469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36829054 36829212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36839217 36839441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36862658 36863344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4986 nt):
ATGGAGGCGCCGGCGGCCGAGCCCCCGGTCCGGGGCTGCGGTCCCCAGCCCGCGCCTGCACCCGCGCCTG
CCCCGGAGAGGAAAAAGAGCCACCGCGCGCCGTCGCCGGCCCGGCCCAAAGACGTGGCCGGCTGGTCGCT
GGCTAAGGGCCGCCGCGGCCCAGGCCCGGGCTCAGCAGTCGCCTGCAGCGCCGCGTTCTCCTCACGGCCG
GACAAGAAGGGGCGCGCAGTGGCTCCCGGGGCGCGCGGTGCGGGTGTGCGGGTGGCCGGGGTCCGCACCG
GGGTCCGTGCCAAGGGCCGTCCGCGCTCGGGTGCGGGGCCGCGACCGCCACCGCCGCCCCCCAGCCTCAC
GGATAGCAGCTCGGAGGTGTCGGACTGCGCGTCGGAGGAGGCGCGCCTGCTGGGCCTGGAGCTGGCGCTG
AGCAGCGACGCCGAGTCCGCGGCCGGGGGCCCGGCGGGGGTCCGTACGGGGCAGCCGGCCCAGCCCGCGC
CCTCCGCGCAGCAGCCCCCGCGGCCGCCCGCCTCCCCGGACGAGCCGTCGGTGGCCGCGTCGTCGGTGGG
CAGCAGCCGCTTGCCGCTCAGCGCCTCGCTTGCCTTCTCCGACCTCACCGAGGAGATGCTGGACTGCGGG
CCCAGCGGCTTGGTGCGGGAGCTGGAGGAGCTGCGCTCGGAGAACGACTATCTCAAGGACGAGATTGAGG
AGCTGCGGGCCGAGATGCTGGAGATGCGGGACGTCTATATGGAGGAGGACGTGTATCAGCTGCAGGAGCT
GCGACAGCAGCTGGACCAGGCCAGCAAGACCTGCCGCATCCTGCAGTACCGGCTGCGCAAAGCCGAGCGC
CGCAGTCTCCGTGCCGCCCAGACCGGCCAGGTGGACGGCGAGCTTATCCGTGGTCTGGAGCAGGATGTCA
AGGTCTCTAAGGACATCTCCATGCGGCTGCATAAGGAGCTCGAGGTGGTGGAGAAGAAACGGGCGCGGCT
GGAGGAGGAGAACGAAGAGCTTCGTCAGCGGCTCATCGAGACTGAGCTGGCTAAGCAGGTGCTGCAGACG
GAGCTGGAGCGACCGAGAGAGCATTCCTTGAAGAAAAGAGGAACCCGCTCCCTGGGGAAGGCCGATAAGA
AGACTTTGGTGCAGGAGGACAGTGCAGACCTGAAGTGCCAGTTGCACTTTGCAAAGGAGGAGTCAGCCCT
CATGTGCAAGAAGCTCACTAAGCTTGCCAAGGAGAATGACAGCATGAAGGAGGAGCTGCTGAAGTACCGC
TCGCTCTATGGGGACCTGGACAGCGCGCTGTCAGCCGAGGAGCTGGCCGATGCCCCCCACTCGCGGGAGA
CCGAGCTGAAGGTGCACCTGAAGCTGGTGGAGGAGGAAGCCAACCTGCTGAGCCGCCGCATCGTGGAGCT
GGAGGTGGAGAACCGAGGCCTGCGGGCTGAGATGGACGACATGAAGGATCATGGAGGTGGCTGTGGGGGT
CCTGAGGCACGCCTGGCCTTCTCCGCGCTGGGTGGCGGAGAGTGCGGGGAGAGCTTGGCAGAGCTGCGGC
GACACCTGCAGTTTGTCGAAGAGGAGGCCGAGCTGCTGCGGCGCTCCTCTGCCGAGCTCGAGGACCAGAA
CAAGCTGCTGCTGAACGAGCTGGCCAAGTTCCGCTCGGAGCACGAGCTGGACGTGGCGCTGTCGGAGGAC
AGTTGTTCTGTGCTCAGCGAACCTTCACAGGAGGAGCTGGCGGCCGCCAAGCTGCAGATCGGCGAGCTCA
GCGGCAAGGTCAAGAAGCTGCAGTACGAGAACCGCGTGCTCCTCTCCAACCTCCAGCGCTGTGACCTCGC
CTCCTGCCAGAGTACGCGGCCCATGCTGGAGACGGACGCCGAGGCCGGGGACTCTGCCCAGTGTGTGCCT
GCTCCCCTGGGCGAGACACACGAGTCCCATGCGGTCCGACTCTGCAGAGCCAGGGAGGCCGAGGTGCTGC
CTGGGCTGAGAGAGCAGGCCGCCCTGGTCAGTAAGGCCATCGATGTCCTGGTGGCTGATGCCAATGGCTT
CACGGCTGGCCTCCGGCTGTGTCTGGACAACGAGTGTGCTGACTTCCGGCTGCATGAGGCCCCCGACAAC
AGCGAGGGCCCCAGGGACACCAAGCTCATCCATGCCATCCTGGTGCGCCTGAGCGTGCTGCAGCAGGAGC
TGAATGCCTTCACGCGGAAGGCAGATGCAGTCCTCGGGTGCTCTGTCAAGGAACAGCAGGAGTCCTTCTC
ATCACTGCCCCCCTTGGGCTCCCAGGGGCTCTCTAAGGAGATTCTTCTGGCAAAAGACCTTGGCTCAGAC
TTTCAGCCACCTGACTTCAGGGACCTGCCGGAATGGGAGCCCAGGATCCGAGAGGCTTTCCGCACTGGTG
ACTTGGACTCTAAGCCCGACCCCAGCCGGAGCTTCAGGCCTTACCGAGCTGAAGACAATGATTCCTATGC
CTCTGAGATCAAGGAGCTGCAGCTGGTGCTGGCTGAGGCCCACGACAGCCTCCGGGGCTTGCAAGAGCAG
CTCTCCCAGGAGCGGCAGCTACGAAAGGAGGAGGCCGACAATTTCAACCAGAAAATGGTCCAGCTGAAGG
AGGACCAGCAGAGGGCGCTCCTGAGGCGGGAGTTTGAGCTGCAGAGTCTGAGCCTCCAGCGGAGGCTGGA
GCAGAAATTCTGGAGCCAGGAGAAGAACATGCTGGTGCAGGAGTCCCAGCAATTCAAGCACAACTTCCTG
CTGCTCTTCATGAAGCTCAGGTGGTTCCTCAAGCGCTGGCGGCAGGGCAAGGTTTTGCCCAGCGAAGGGG
ATGACTTCCTCGAGGTGAACAGCATGAAGGAGCTGTACTTGCTGATGGAGGAAGAGGAGATAAACGCTCA
GCATTCTGATAACAAGGCCTGCACGGGGGACAGCTGGACCCAGAACACGCCCAATGAGTACATCAAGACA
CTGGCCGACATGAAGGTGACGCTGAAGGAGCTGTGCTGGCTGCTCCGGGATGAACGCCGTGGTCTGACGG
AGCTTCAGCAACAGTTTGCCAAGGCCAAGGCTACCTGGGAGACAGAGCGGGCAGAGCTCAAGGGCCATAC
CTCCCAGATGGAGCTGAAGACAGGGAAGGGGGCCGGGGAGCGGGCAGGGCCCGACTGGAAGGCAGCCCTA
CAGCGGGAGCGTGAGGAGCAGCAGCACCTCCTAGCTGAGTCCTACAGCGCTGTCATGGAGCTGACTCGGC
AGCTGCAGATCAGTGAGCGCAACTGGAGCCAGGAAAAGCTGCAGCTGGTGGAGCGGCTGCAGGGTGAGAA
GCAGCAGGTGGAGCAGCAGGTGAAGGAGCTGCAGAACCGCCTAAGCCAGCTGCAGAAGGCTGCCGACCCC
TGGGTCCTGAAGCACTCGGAGCTGGAGAAGCAGGACAACAGCTGGAAGGAGACACGCAGTGAGAAGATCC
ACGACAAGGAGGCTGTTTCCGAAGTTGAGCTTGGAGGAAATGGTTTAAAGAGAACCAAATCTGTTTCTTC
CATGTCTGAGTTTGAAAGTTTGCTCGACTGTTCCCCTTACCTTGCTGGCGGAGATGCCCGGGGCAAGAAG
CTGCCTAACAACCCTGCCTTTGGCTTTGTGAGCTCCGAGCCAGGGGATCCAGAGAAAGACACCAAGGAGA
AGCCTGGGCTCTCGTCGAGGGACTGCAACCACCTGGGTGCCCTGGCCTGCCAGGACCCCCCAGGGAGGCA
GATGCAGCGCAGCTACACGGCTCCTGACAAGACGGGCATCCGAGTCTACTATAGTCCCCCGGTGGCCCGG
CGCCTCGGAGTCCCTGTGGTTCATGACAAAGAGGGCAAGATCATTATCGAGCCCGGCTTCCTCTTCACCA
CAGCCAAGCCCAAAGAGTCGGCCGAGGCTGATGGGCTGGCTGAGAGCTCCTATGGTCGGTGGCTCTGCAA
CTTCTCACGGCAGCGCCTGGACGGAGGCTCAGCGGGCAGCCCCTCGGCGGCCGGGCCTGGCTTCCCAGCG
GCCCTGCATGACTTTGAGATGTCAGGCAACATGAGTGATGACATGAAGGAGATCACCAACTGTGTGCGCC
AGGCCATGCGCTCCGGCTCACTGGAGAGGAAAGTGAAGAGCACATCCAGCCAGACGGTGGGCCTGGCCAG
TGTGGGCACACAGACCATCCGCACGGTCAGCGTGGGCCTGCAGACCGACCCACCCCGCAGCAGCCTCCAT
GGCAAGGCCTGGTCACCCCGCAGCTCTTCGCTCGTGTCTGTGCGCAGCAAGCAGATCTCCTCCTCCCTGG
ACAAGGTCCATTCGCGCATCGAGCGGCCCTGCTGCTCCCCCAAGTATGGCTCACCAAAGCTCCAGAGGCG
GTCTGTGTCCAAGCTGGACAGCAGCAAGGACCGCAGCCTGTGGAACCTGCACCAGGGCAAGCAGAACGGC
TCGGCCTGGGCCCGCTCCACCACCACGCGGGACAGCCCTGTATTGAGAAACATCAACGATGGACTCTCCA
GCCTCTTCAGTGTGGTGGAGCACTCAGGGAGCACGGAGTCTGTCTGGAAACTAGGCATGTCTGAGACGCG
GGCCAAGCCCGAGCCTCCCAAGTACGGCATTGTGCAGGAATTCTTCCGTAATGTGTGTGGCCGGGCACCG
AGCCCCACCTCATCAGCAGGAGAGGAGGGCACCAAGAAGCCAGAGCCCCTCTCCCCAGCCAGCTACCATC
AGCCAGAGGGTGTGGCCAGGATCCTGAACAAGAAGGCAGCCAAGTTGGGCAGCAGTGAGGAGGTCAGACT
CACCATGCTCCCCCAGGTGGGGAAGGATGGTGTCCTCCGGGACGGAGATGGAGCCGTGGTCCTTCCCAAT
GAGGACGCTGTTTGTGACTGTAGTACCCAGTCTCTCACCTCCTGCTTCGCCCGATCGTCCCGCTCTGCCA
TCCGCCACTCTCCTTCCAAGTGCAGGCTGCACCCTTCAGAGTCCAGCTGGGGTGGGGAGGAGAGGGCACT
CCCCCCCAGCGAGTGA

Translation (1661 aa):
MEAPAAEPPVRGCGPQPAPAPAPAPERKKSHRAPSPARPKDVAGWSLAKGRRGPGPGSAVACSAAFSSRP
DKKGRAVAPGARGAGVRVAGVRTGVRAKGRPRSGAGPRPPPPPPSLTDSSSEVSDCASEEARLLGLELAL
SSDAESAAGGPAGVRTGQPAQPAPSAQQPPRPPASPDEPSVAASSVGSSRLPLSASLAFSDLTEEMLDCG
PSGLVRELEELRSENDYLKDEIEELRAEMLEMRDVYMEEDVYQLQELRQQLDQASKTCRILQYRLRKAER
RSLRAAQTGQVDGELIRGLEQDVKVSKDISMRLHKELEVVEKKRARLEEENEELRQRLIETELAKQVLQT
ELERPREHSLKKRGTRSLGKADKKTLVQEDSADLKCQLHFAKEESALMCKKLTKLAKENDSMKEELLKYR
SLYGDLDSALSAEELADAPHSRETELKVHLKLVEEEANLLSRRIVELEVENRGLRAEMDDMKDHGGGCGG
PEARLAFSALGGGECGESLAELRRHLQFVEEEAELLRRSSAELEDQNKLLLNELAKFRSEHELDVALSED
SCSVLSEPSQEELAAAKLQIGELSGKVKKLQYENRVLLSNLQRCDLASCQSTRPMLETDAEAGDSAQCVP
APLGETHESHAVRLCRAREAEVLPGLREQAALVSKAIDVLVADANGFTAGLRLCLDNECADFRLHEAPDN
SEGPRDTKLIHAILVRLSVLQQELNAFTRKADAVLGCSVKEQQESFSSLPPLGSQGLSKEILLAKDLGSD
FQPPDFRDLPEWEPRIREAFRTGDLDSKPDPSRSFRPYRAEDNDSYASEIKELQLVLAEAHDSLRGLQEQ
LSQERQLRKEEADNFNQKMVQLKEDQQRALLRREFELQSLSLQRRLEQKFWSQEKNMLVQESQQFKHNFL
LLFMKLRWFLKRWRQGKVLPSEGDDFLEVNSMKELYLLMEEEEINAQHSDNKACTGDSWTQNTPNEYIKT
LADMKVTLKELCWLLRDERRGLTELQQQFAKAKATWETERAELKGHTSQMELKTGKGAGERAGPDWKAAL
QREREEQQHLLAESYSAVMELTRQLQISERNWSQEKLQLVERLQGEKQQVEQQVKELQNRLSQLQKAADP
WVLKHSELEKQDNSWKETRSEKIHDKEAVSEVELGGNGLKRTKSVSSMSEFESLLDCSPYLAGGDARGKK
LPNNPAFGFVSSEPGDPEKDTKEKPGLSSRDCNHLGALACQDPPGRQMQRSYTAPDKTGIRVYYSPPVAR
RLGVPVVHDKEGKIIIEPGFLFTTAKPKESAEADGLAESSYGRWLCNFSRQRLDGGSAGSPSAAGPGFPA
ALHDFEMSGNMSDDMKEITNCVRQAMRSGSLERKVKSTSSQTVGLASVGTQTIRTVSVGLQTDPPRSSLH
GKAWSPRSSSLVSVRSKQISSSLDKVHSRIERPCCSPKYGSPKLQRRSVSKLDSSKDRSLWNLHQGKQNG
SAWARSTTTRDSPVLRNINDGLSSLFSVVEHSGSTESVWKLGMSETRAKPEPPKYGIVQEFFRNVCGRAP
SPTSSAGEEGTKKPEPLSPASYHQPEGVARILNKKAAKLGSSEEVRLTMLPQVGKDGVLRDGDGAVVLPN
EDAVCDCSTQSLTSCFARSSRSAIRHSPSKCRLHPSESSWGGEERALPPSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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