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Report for CCDS11696.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11696.1 Public Homo sapiens 17 RPL38 24 110 108 CCDS HistoryNCBI Gene:6169Re-query CCDS DB by CCDS ID:11696.1Re-query CCDS DB by GeneID:6169See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11696.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311111.11 ENSP00000309830.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000311111.11Link to Ensembl Protein Viewer:ENSP00000309830.6Re-query CCDS DB by Nucleotide ID:ENST00000311111Re-query CCDS DB by Protein ID:ENSP00000309830
Original member Current member EBI ENST00000439590.6 ENSP00000390279.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000439590.6Link to Ensembl Protein Viewer:ENSP00000390279.2Re-query CCDS DB by Nucleotide ID:ENST00000439590Re-query CCDS DB by Protein ID:ENSP00000390279
Original member Current member EBI ENST00000533498.1 ENSP00000434243.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000533498.1Link to Ensembl Protein Viewer:ENSP00000434243.1Re-query CCDS DB by Nucleotide ID:ENST00000533498Re-query CCDS DB by Protein ID:ENSP00000434243
Original member Current member NCBI NM_000999.4 NP_000990.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000999.4Link to Protein Sequence:NP_000990.1Re-query CCDS DB by Nucleotide ID:NM_000999Re-query CCDS DB by Protein ID:NP_000990Link to BLAST:NP_000990.1
Original member Current member NCBI NM_001035258.2 NP_001030335.1 Accepted alive Link to Nucleotide Sequence:NM_001035258.2Link to Protein Sequence:NP_001030335.1Re-query CCDS DB by Nucleotide ID:NM_001035258Re-query CCDS DB by Protein ID:NP_001030335Link to BLAST:NP_001030335.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000990.1 70 P63173 70 100% 0 0
NP_001030335.1 70 P63173 70 100% 0 0

Chromosomal Locations for CCDS 11696.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 74203956 74203958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74204130 74204190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74209187 74209309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74209804 74209829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (213 nt):
ATGCCTCGGAAAATTGAGGAAATCAAGGACTTCCTGCTCACAGCCCGACGAAAGGATGCCAAATCTGTCA
AGATCAAGAAAAATAAGGACAACGTGAAGTTTAAAGTTCGATGCAGCAGATACCTTTACACCCTGGTCAT
CACTGACAAAGAGAAGGCAGAGAAACTGAAGCAGTCCCTGCCCCCCGGTTTGGCAGTGAAGGAACTGAAA
TGA

Translation (70 aa):
MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKELK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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