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Report for CCDS47538.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47538.1 Public Homo sapiens 7 ZNF12 24 110 108 CCDS HistoryNCBI Gene:7559Re-query CCDS DB by CCDS ID:47538.1Re-query CCDS DB by GeneID:7559See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47538.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000405858.6 ENSP00000385939.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000405858.6Link to Ensembl Protein Viewer:ENSP00000385939.1Re-query CCDS DB by Nucleotide ID:ENST00000405858Re-query CCDS DB by Protein ID:ENSP00000385939
Original member Current member NCBI NM_016265.4 NP_057349.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016265.4Link to Protein Sequence:NP_057349.2Re-query CCDS DB by Nucleotide ID:NM_016265Re-query CCDS DB by Protein ID:NP_057349Link to BLAST:NP_057349.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057349.2 697 P17014-1 697 100% 0 0

Chromosomal Locations for CCDS 47538.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 6690848 6692703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6697339 6697434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6697685 6697811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6705159 6705173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2094 nt):
ATGAATAAATCCCTGGGGCCAGTGTCATTCAAGGACGTGGCTGTGGACTTCACCCAGGAGGAATGGCAGC
AGCTGGATCCTGAGCAGAAGATAACTTACAGGGATGTGATGCTGGAGAACTACAGCAATCTAGTTTCTGT
GGGGTATCACATTATCAAACCGGATGTTATCAGCAAGTTGGAGCAAGGAGAAGAGCCATGGATAGTAGAA
GGAGAATTCCTACTTCAGAGCTATCCAGATGAAGTCTGGCAAACTGATGACCTAATAGAGAGAATCCAGG
AAGAGGAAAATAAACCTTCAAGGCAAACTGTGTTCATTGAGACCCTGATTGAAGAGAGAGGTAATGTTCC
TGGTAAAACTTTTGATGTAGAAACGAACCCTGTTCCTTCAAGAAAAATAGCCTATAAAAATAGCCTCTGT
GACTCATGTGAAAAGTGTTTAACGTCTGTTTCAGAATATATTAGTAGTGATGGAAGCTATGCAAGAATGA
AAGCTGATGAATGTAGTGGATGTGGGAAATCACTCCTCCATATTAAGCTTGAGAAAACTCATCCAGGAGA
TCAAGCTTATGAATTTAATCAAAATGGGGAACCTTATACTCTAAATGAAGAAAGTCTTTATCAGAAAATT
CGTATTTTGGAGAAACCTTTTGAATATATTGAATGCCAGAAAGCCTTCCAAAAGGACACTGTTTTTGTTA
ATCACATGGAAGAAAAGCCCTATAAGTGGAATGGATCTGAAATAGCCTTTCTCCAGATGTCGGACCTCAC
TGTACATCAGACATCTCATATGGAAATGAAGCCCTATGAATGCAGTGAATGTGGGAAATCCTTCTGTAAA
AAGTCAAAATTTATTATACATCAGAGGACTCACACAGGAGAGAAACCTTACGAATGTAATCAGTGTGGGA
AATCCTTCTGCCAGAAGGGAACCCTTACTGTGCATCAGAGAACACACACAGGGGAGAAGCCCTATGAATG
TAATGAATGTGGGAAGAACTTTTACCAGAAGTTACACCTCATTCAGCATCAGAGAACTCACTCAGGAGAG
AAGCCCTATGAATGTAGTTATTGTGGAAAATCCTTTTGCCAGAAGACACACCTCACACAACATCAGAGAA
CACATTCAGGAGAGAGACCTTATGTTTGTCATGACTGTGGGAAAACCTTCTCGCAGAAGTCAGCACTTAA
TGACCATCAGAAAATTCACACAGGTGTGAAACTCTACAAGTGTAGTGAATGTGGGAAATGCTTCTGCCGC
AAGTCTACTCTCACGACCCACCTGAGGACCCACACAGGAGAGAAACCGTATGAATGTAATGAGTGTGGAA
AATTCTTCTCTCGGTTGTCATATCTCACTGTACATTATAGAACTCATTCAGGAGAGAAACCCTATGAATG
TAATGAATGTGGAAAAACCTTCTACCTGAATTCAGCCCTCATGAGACATCAGAGAGTGCACACAGGAGAG
AAACCTTACGAATGTAATGAATGTGGAAAGTTATTCTCCCAGTTGTCATACCTCACTATCCATCATAGAA
CTCATTCAGGAGTAAAACCCTATGAATGTAGTGAATGTGGGAAAACCTTCTACCAGAACTCAGCCCTTTG
TAGACATCGGAGAATACACAAAGGAGAGAAGCCCTATGAATGCTATATATGTGGAAAATTCTTCTCTCAG
ATGTCATACCTCACTATACATCATAGAATTCATTCAGGAGAGAAGCCCTATGAATGTAGTGAATGTGGGA
AAACCTTCTGCCAGAATTCAGCCCTTAATCGACATCAGAGAACACACACAGGAGAGAAAGCCTACGAATG
TTATGAATGTGGGAAGTGCTTCTCTCAGATGTCCTATCTCACTATACATCATCGAATTCATTCAGGAGAG
AAACCCTTTGAATGTAATGAGTGTGGAAAAGCCTTCTCTCGGATGTCATACCTCACTGTACATTATAGAA
CTCATTCAGGAGAGAAACCCTATGAGTGTACTGAATGTGGAAAAAAATTCTACCACAAATCAGCATTCAA
CAGCCATCAGAGAATTCATAGGAGAGGCAATATGAATGTAATAGATGTGGGAAGGCTTCTCTGA

Translation (697 aa):
MNKSLGPVSFKDVAVDFTQEEWQQLDPEQKITYRDVMLENYSNLVSVGYHIIKPDVISKLEQGEEPWIVE
GEFLLQSYPDEVWQTDDLIERIQEEENKPSRQTVFIETLIEERGNVPGKTFDVETNPVPSRKIAYKNSLC
DSCEKCLTSVSEYISSDGSYARMKADECSGCGKSLLHIKLEKTHPGDQAYEFNQNGEPYTLNEESLYQKI
RILEKPFEYIECQKAFQKDTVFVNHMEEKPYKWNGSEIAFLQMSDLTVHQTSHMEMKPYECSECGKSFCK
KSKFIIHQRTHTGEKPYECNQCGKSFCQKGTLTVHQRTHTGEKPYECNECGKNFYQKLHLIQHQRTHSGE
KPYECSYCGKSFCQKTHLTQHQRTHSGERPYVCHDCGKTFSQKSALNDHQKIHTGVKLYKCSECGKCFCR
KSTLTTHLRTHTGEKPYECNECGKFFSRLSYLTVHYRTHSGEKPYECNECGKTFYLNSALMRHQRVHTGE
KPYECNECGKLFSQLSYLTIHHRTHSGVKPYECSECGKTFYQNSALCRHRRIHKGEKPYECYICGKFFSQ
MSYLTIHHRIHSGEKPYECSECGKTFCQNSALNRHQRTHTGEKAYECYECGKCFSQMSYLTIHHRIHSGE
KPFECNECGKAFSRMSYLTVHYRTHSGEKPYECTECGKKFYHKSAFNSHQRIHRRGNMNVIDVGRLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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