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Report for CCDS5043.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
5043.1 |
Public |
Homo sapiens |
6 |
PNISR |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:25957](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:5043.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:25957](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 6 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 5043.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000369239.10 |
ENSP00000358242.5 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000369239.10](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000358242.5](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000369239](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000358242](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000438806.5 |
ENSP00000387997.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000438806.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000387997.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000438806](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000387997](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000647811.1 |
ENSP00000496842.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000647811.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000496842.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000647811](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000496842](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001322405.2 |
NP_001309334.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001322405.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001309334.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001322405](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001309334](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001309334.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001322406.2 |
NP_001309335.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001322406.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001309335.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001322406](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001309335](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001309335.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001322408.2 |
NP_001309337.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001322408.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001309337.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001322408](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001309337](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001309337.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_015491.3 |
NP_056306.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_015491.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_056306.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_015491](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_056306](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_056306.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_032870.4 |
NP_116259.2 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_032870.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_116259.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_032870](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_116259](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_116259.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 5043.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2418 nt): ATGTGGGATCAAGGAGGACAGCCTTGGCAGCAGTGGCCCTTGAACCAGCAACAATGGATGCAGTCATTCC AGCACCAACAGGATCCAAGCCAGATTGATTGGGCTGCATTGGCCCAAGCTTGGATTGCCCAAAGAGAAGC TTCAGGACAGCAAAGCATGGTAGAACAACCACCAGGAATGATGCCAAATGGACAAGATATGTCTACAATG GAATCTGGTCCAAACAATCATGGGAATTTCCAAGGGGATTCAAACTTCAACAGAATGTGGCAACCAGAAT GGGGAATGCATCAGCAACCCCCACACCCCCCTCCAGATCAGCCATGGATGCCACCAACACCAGGCCCAAT GGACATTGTTCCTCCTTCTGAAGACAGCAACAGTCAGGACAGTGGGGAATTTGCCCCTGACAACAGGCAT ATATTTAACCAGAACAATCACAACTTTGGTGGACCACCCGATAATTTTGCAGTGGGGCCAGTGAACCAGT TTGACTATCAGCATGGGGCTGCTTTTGGTCCACCGCAAGGTGGATTTCATCCTCCTTATTGGCAACCAGG ACCTCCAGGACCTCCAGCACCTCCCCAGAATCGAAGAGAAAGGCCATCATCATTCAGGGATCGTCAGCGT TCACCTATTGCACTTCCTGTGAAGCAGGAGCCTCCACAAATTGACGCAGTAAAACGCAGGACTCTTCCCG CTTGGATTCGCGAAGGTCTTGAAAAAATGGAACGTGAAAAGCAGAAGAAATTGGAGAAAGAAAGAATGGA ACAACAACGTTCACAATTGTCCAAAAAAGAAAAAAAGGCCACAGAAGATGCTGAAGGAGGGGATGGCCCT CGTTTACCTCAGAGAAGTAAATTTGATAGTGATGAGGAAGAAGAAGACACTGAAAATGTTGAGGCTGCAA GTAGTGGGAAAGTCACCAGAAGTCCATCCCCAGTTCCTCAAGAAGAGCACAGTGACCCTGAGATGACTGA AGAGGAGAAAGAGTATCAAATGATGTTGCTGACAAAAATGCTTCTAACAGAAATTCTGCTGGATGTCACA GATGAAGAAATTTATTACGTAGCCAAAGATGCACACCGCAAAGCAACGAAAGCTCCTGCAAAACAGCTGG CACAGTCCAGTGCACTGGCTTCCCTCACTGGACTCGGTGGACTGGGTGGTTATGGATCAGGAGACAGTGA AGATGAGAGGAGTGACAGAGGATCTGAGTCATCTGACACTGATGATGAAGAATTACGGCATCGAATCCGG CAAAAACAGGAAGCTTTTTGGAGAAAAGAAAAAGAACAGCAGCTATTACATGATAAACAGATGGAAGAAG AAAAGCAGCAAACAGAAAGGGTTACAAAAGAGATGAATGAATTTATCCATAAAGAGCAAAATAGTTTATC ACTACTAGAAGCAAGAGAAGCAGACGGTGATGTGGTTAATGAAAAGAAGAGAACTCCAAATGAAACCACA TCAGTTTTAGAACCAAAAAAAGAGCATAAAGAAAAAGAAAAACAAGGAAGGAGTAGGTCGGGAAGTTCTA GTAGTGGTAGTTCCAGTAGCAATAGCAGAACTAGTAGTACTAGTAGTACTGTCTCTAGCTCTTCATACAG TTCTAGCTCAGGTAGTAGTCGTACTTCTTCTCGGTCTTCTTCTCCTAAAAGGAAAAAGAGACACAGTAGG AGTAGATCTCCAACAATCAAAGCTAGACGTAGCAGGAGTAGAAGCTATTCTCGCAGAATTAAAATAGAGA GCAATAGGGCTAGGGTAAAGATTAGAGATAGAAGGAGATCTAATAGAAATAGCATTGAAAGAGAAAGACG ACGAAATCGGAGTCCTTCCCGAGAGAGACGTAGAAGTAGAAGTCGCTCAAGGGATAGACGAACCAATCGT GCCAGTCGCAGTAGGAGTCGAGATAGGCGTAAAATTGATGATCAACGTGGAAATCTTAGTGGGAACAGTC ATAAGCATAAAGGTGAGGCTAAAGAACAAGAGAGGAAAAAGGAGAGGAGTCGAAGTATAGATAAAGATAG GAAAAAGAAAGACAAAGAAAGGGAACGTGAACAGGATAAAAGAAAAGAGAAACAAAAAAGGGAAGAAAAA GATTTTAAGTTCAGTAGTCAGGATGATAGATTAAAAAGGAAACGAGAAAGTGAAAGAACATTTTCTAGGA GTGGTTCTATATCTGTTAAAATCATAAGACATGATTCTAGACAGGATAGTAAGAAAAGTACTACCAAAGA TAGTAAAAAACATTCAGGCTCTGATTCTAGTGGAAGGAGCAGTTCTGAGTCTCCAGGAAGTAGCAAAGAA AAGAAGGCTAAGAAGCCTAAACATAGTCGATCGCGATCCGTGGAGAAATCTCAAAGGTCTGGTAAGAAGG CAAGCCGCAAACACAAGTCTAAGTCCCGATCAAGGTAG
Translation (805 aa): MWDQGGQPWQQWPLNQQQWMQSFQHQQDPSQIDWAALAQAWIAQREASGQQSMVEQPPGMMPNGQDMSTM ESGPNNHGNFQGDSNFNRMWQPEWGMHQQPPHPPPDQPWMPPTPGPMDIVPPSEDSNSQDSGEFAPDNRH IFNQNNHNFGGPPDNFAVGPVNQFDYQHGAAFGPPQGGFHPPYWQPGPPGPPAPPQNRRERPSSFRDRQR SPIALPVKQEPPQIDAVKRRTLPAWIREGLEKMEREKQKKLEKERMEQQRSQLSKKEKKATEDAEGGDGP RLPQRSKFDSDEEEEDTENVEAASSGKVTRSPSPVPQEEHSDPEMTEEEKEYQMMLLTKMLLTEILLDVT DEEIYYVAKDAHRKATKAPAKQLAQSSALASLTGLGGLGGYGSGDSEDERSDRGSESSDTDDEELRHRIR QKQEAFWRKEKEQQLLHDKQMEEEKQQTERVTKEMNEFIHKEQNSLSLLEAREADGDVVNEKKRTPNETT SVLEPKKEHKEKEKQGRSRSGSSSSGSSSSNSRTSSTSSTVSSSSYSSSSGSSRTSSRSSSPKRKKRHSR SRSPTIKARRSRSRSYSRRIKIESNRARVKIRDRRRSNRNSIERERRRNRSPSRERRRSRSRSRDRRTNR ASRSRSRDRRKIDDQRGNLSGNSHKHKGEAKEQERKKERSRSIDKDRKKKDKEREREQDKRKEKQKREEK DFKFSSQDDRLKRKRESERTFSRSGSISVKIIRHDSRQDSKKSTTKDSKKHSGSDSSGRSSSESPGSSKE KKAKKPKHSRSRSVEKSQRSGKKASRKHKSKSRSR
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