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Report for CCDS2837.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2837.1 Public Homo sapiens 3 RRP9 24 110 108 CCDS HistoryNCBI Gene:9136Re-query CCDS DB by CCDS ID:2837.1Re-query CCDS DB by GeneID:9136See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2837.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000232888.7 ENSP00000232888.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000232888.7Link to Ensembl Protein Viewer:ENSP00000232888.6Re-query CCDS DB by Nucleotide ID:ENST00000232888Re-query CCDS DB by Protein ID:ENSP00000232888
Original member Current member NCBI NM_004704.5 NP_004695.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004704.5Link to Protein Sequence:NP_004695.1Re-query CCDS DB by Nucleotide ID:NM_004704Re-query CCDS DB by Protein ID:NP_004695Link to BLAST:NP_004695.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004695.1 475 O43818 475 100% 0 0

Chromosomal Locations for CCDS 2837.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 51933506 51933599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51933708 51933781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51934472 51934551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51934631 51934776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51935197 51935259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51935342 51935476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51935592 51935692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51936257 51936349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51936431 51936555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51937192 51937318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51937545 51937586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51937669 51937736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51938095 51938204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51941409 51941491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51941781 51941867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGTCGGCAACAGCGGCTGCTCGTAAGCGGGGAAAGCCGGCCTCTGGGGCCGGGGCTGGCGCGGGGGCCG
GCAAGCGGCGGCGAAAGGCCGACTCTGCGGGGGACAGGGGCAAATCCAAGGGTGGCGGCAAGATGAATGA
GGAGATCTCCAGCGACTCTGAGAGCGAGAGCCTAGCTCCAAGGAAGCCTGAGGAGGAGGAGGAGGAGGAG
CTGGAGGAAACTGCACAGGAAAAGAAGCTGCGCTTGGCCAAGCTCTACCTAGAGCAGCTCCGTCAGCAAG
AGGAGGAGAAGGCTGAGGCCCGTGCATTTGAGGAGGACCAGGTGGCGGGGCGCCTGAAGGAGGATGTGCT
TGAGCAGAGGGGCAGGCTGCAGAAGTTGGTGGCAAAAGAGATCCAGGCCCCAGCCTCAGCTGACATTCGC
GTTTTACGGGGGCACCAGCTCTCTATCACATGTTTGGTCGTCACCCCCGATGACTCAGCCATCTTCTCTG
CTGCCAAAGACTGCAGCATCATTAAGTGGAGCGTGGAGAGTGGACGGAAGCTGCATGTGATTCCTCGAGC
CAAGAAGGGTGCCGAGGGAAAGCCCCCTGGCCACAGCAGCCACGTCCTCTGCATGGCCATCTCCTCCGAC
GGCAAGTACCTTGCCTCTGGTGACCGCAGCAAGCTCATTCTCATTTGGGAGGCCCAGAGCTGCCAGCACT
TGTACACCTTCACAGGACACCGGGATGCAGTGTCGGGTCTGGCATTCCGCAGAGGCACCCACCAGCTCTA
CAGCACATCCCACGATCGCTCCGTGAAGGTGTGGAATGTGGCAGAGAACTCCTACGTGGAGACGCTCTTC
GGACACCAGGACGCTGTGGCTGCACTGGATGCCTTGAGCCGGGAGTGCTGTGTGACGGCTGGGGGCCGGG
ATGGGACTGTACGTGTGTGGAAGATCCCCGAGGAGTCCCAGCTTGTCTTCTATGGCCACCAGGGCTCCAT
CGACTGCATCCACCTAATCAATGAGGAGCACATGGTGTCCGGCGCGGACGATGGCTCTGTGGCCTTGTGG
GGTCTCTCCAAGAAGCGACCACTTGCCCTGCAGCGTGAAGCTCACGGGCTGCGGGGAGAGCCAGGCCTGG
AGCAGCCCTTCTGGATATCGTCGGTGGCAGCCCTCCTCAACACAGACCTTGTGGCCACAGGCTCCCACAG
CTCCTGTGTGCGGCTTTGGCAGTGTGGGGAAGGCTTCCGGCAGCTTGACCTTCTCTGTGACATCCCCCTG
GTGGGTTTTATCAACAGCCTCAAGTTCTCCAGCTCTGGGGACTTCCTGGTGGCTGGGGTAGGGCAGGAGC
ACAGGCTTGGCCGATGGTGGAGAATCAAAGAGGCTCGGAATTCTGTCTGCATCATCCCACTCCGCAGGGT
CCCTGTACCCCCAGCTGCTGGTTCCTGA

Translation (475 aa):
MSATAAARKRGKPASGAGAGAGAGKRRRKADSAGDRGKSKGGGKMNEEISSDSESESLAPRKPEEEEEEE
LEETAQEKKLRLAKLYLEQLRQQEEEKAEARAFEEDQVAGRLKEDVLEQRGRLQKLVAKEIQAPASADIR
VLRGHQLSITCLVVTPDDSAIFSAAKDCSIIKWSVESGRKLHVIPRAKKGAEGKPPGHSSHVLCMAISSD
GKYLASGDRSKLILIWEAQSCQHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVETLF
GHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQLVFYGHQGSIDCIHLINEEHMVSGADDGSVALW
GLSKKRPLALQREAHGLRGEPGLEQPFWISSVAALLNTDLVATGSHSSCVRLWQCGEGFRQLDLLCDIPL
VGFINSLKFSSSGDFLVAGVGQEHRLGRWWRIKEARNSVCIIPLRRVPVPPAAGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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