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Report for CCDS87.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87.1 Public Homo sapiens 1 DNAJC11 24 110 108 CCDS HistoryNCBI Gene:55735Re-query CCDS DB by CCDS ID:87.1Re-query CCDS DB by GeneID:55735See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377577.10 ENSP00000366800.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377577.10Link to Ensembl Protein Viewer:ENSP00000366800.5Re-query CCDS DB by Nucleotide ID:ENST00000377577Re-query CCDS DB by Protein ID:ENSP00000366800
Original member Current member NCBI NM_018198.4 NP_060668.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018198.4Link to Protein Sequence:NP_060668.2Re-query CCDS DB by Nucleotide ID:NM_018198Re-query CCDS DB by Protein ID:NP_060668Link to BLAST:NP_060668.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060668.2 559 Q9NVH1-1 559 100% 0 0

Chromosomal Locations for CCDS 87.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 6635675 6635700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6636117 6636246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6637198 6637340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6637447 6637504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6638295 6638364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6639902 6640057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6644558 6644674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6645041 6645126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6645789 6645978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6651529 6651602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6652829 6652951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6653911 6654039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6667709 6667810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6678394 6678467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6680908 6681037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6701729 6701800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1680 nt):
ATGGCGACGGCCTTGAGCGAGGAGGAGCTGGACAATGAAGACTATTACTCGTTGCTGAACGTGCGCAGGG
AGGCCTCTTCTGAAGAGCTGAAAGCTGCCTACCGGAGGCTCTGTATGCTCTACCATCCAGACAAGCACAG
AGACCCAGAGCTCAAGTCACAGGCGGAACGACTGTTTAACCTTGTTCACCAGGCTTATGAAGTGCTTAGT
GACCCCCAAACCAGGGCCATCTATGATATATATGGGAAGAGAGGACTGGAAATGGAAGGATGGGAGGTTG
TGGAAAGGAGGAGAACCCCTGCTGAAATTCGAGAGGAGTTTGAGCGGCTGCAGAGAGAGAGAGAAGAGAG
GAGATTGCAGCAGCGAACCAATCCCAAGGGAACGATCAGCGTTGGAGTAGATGCCACCGACCTTTTTGAT
CGCTATGATGAGGAGTATGAAGATGTGTCCGGCAGTAGCTTTCCGCAGATTGAAATTAATAAAATGCACA
TATCCCAGTCCATTGAGGCACCCTTGACAGCGACAGACACAGCCATCCTCTCTGGAAGCCTCTCAACCCA
GAATGGAAATGGAGGAGGTTCCATTAACTTTGCGCTCAGACGAGTAACTTCGGCAAAGGGATGGGGAGAG
TTGGAATTTGGAGCTGGAGACCTACAGGGGCCTTTGTTCGGTCTCAAGCTGTTCCGTAATCTCACACCAA
GATGCTTTGTGACAACAAACTGTGCTCTGCAGTTTTCATCCCGTGGAATCCGACCCGGCCTGACCACTGT
CCTAGCTCGGAACCTAGACAAGAACACCGTGGGCTACCTGCAGTGGCGATGGGGTATCCAGTCAGCCATG
AACACTAGCATCGTCCGAGACACTAAAACCAGCCACTTCACTGTGGCCCTGCAGCTGGGAATCCCTCACT
CCTTTGCACTGATCAGCTATCAGCACAAATTCCAAGATGACGATCAGACTCGTGTGAAAGGATCCCTCAA
AGCAGGCTTCTTTGGGACGGTGGTGGAGTACGGAGCTGAGAGGAAGATCTCCAGGCACAGCGTTTTGGGT
GCAGCTGTCAGCGTTGGAGTTCCACAGGGTGTTTCTCTCAAAGTCAAGCTCAACAGGGCCAGTCAGACAT
ACTTCTTCCCTATTCACTTGACGGACCAGCTTCTGCCCAGCGCCATGTTCTATGCCACCGTGGGGCCTCT
AGTGGTCTACTTTGCCATGCACCGTCTGATCATCAAACCATACCTCAGGGCTCAGAAAGAGAAGGAATTG
GAGAAGCAGAGGGAAAGCGCCGCCACCGATGTGCTGCAGAAGAAGCAAGAGGCGGAGTCCGCTGTCCGGC
TGATGCAGGAATCTGTCCGAAGGATAATTGAGGCAGAAGAGTCCAGAATGGGCCTCATCATCGTCAATGC
CTGGTACGGGAAGTTTGTCAATGACAAGAGCAGGAAGAGCGAGAAGGTGAAGGTGATTGACGTGACTGTG
CCCCTGCAGTGCCTGGTGAAGGACTCGAAGCTCATCCTCACGGAGGCCTCCAAGGCTGGGCTGCCTGGCT
TTTATGACCCGTGTGTGGGGGAAGAGAAGAACCTGAAAGTGCTCTATCAGTTCCGGGGCGTCCTGCATCA
GGTGATGGTGCTGGACAGTGAGGCCCTCCGGATACCAAAGCAGTCCCACAGGATCGATACAGATGGATAA

Translation (559 aa):
MATALSEEELDNEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLS
DPQTRAIYDIYGKRGLEMEGWEVVERRRTPAEIREEFERLQREREERRLQQRTNPKGTISVGVDATDLFD
RYDEEYEDVSGSSFPQIEINKMHISQSIEAPLTATDTAILSGSLSTQNGNGGGSINFALRRVTSAKGWGE
LEFGAGDLQGPLFGLKLFRNLTPRCFVTTNCALQFSSRGIRPGLTTVLARNLDKNTVGYLQWRWGIQSAM
NTSIVRDTKTSHFTVALQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLG
AAVSVGVPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAMFYATVGPLVVYFAMHRLIIKPYLRAQKEKEL
EKQRESAATDVLQKKQEAESAVRLMQESVRRIIEAEESRMGLIIVNAWYGKFVNDKSRKSEKVKVIDVTV
PLQCLVKDSKLILTEASKAGLPGFYDPCVGEEKNLKVLYQFRGVLHQVMVLDSEALRIPKQSHRIDTDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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