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Report for CCDS8401.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8401.1 Public Homo sapiens 11 PHLDB1 24 110 108 CCDS HistoryNCBI Gene:23187Re-query CCDS DB by CCDS ID:8401.1Re-query CCDS DB by GeneID:23187See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8401.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361417.6 ENSP00000354498.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000361417.6Link to Ensembl Protein Viewer:ENSP00000354498.2Re-query CCDS DB by Nucleotide ID:ENST00000361417Re-query CCDS DB by Protein ID:ENSP00000354498
Original member Current member EBI ENST00000600882.6 ENSP00000469820.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000600882.6Link to Ensembl Protein Viewer:ENSP00000469820.1Re-query CCDS DB by Nucleotide ID:ENST00000600882Re-query CCDS DB by Protein ID:ENSP00000469820
Original member Current member NCBI NM_001144758.3 NP_001138230.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001144758.3Link to Protein Sequence:NP_001138230.1Re-query CCDS DB by Nucleotide ID:NM_001144758Re-query CCDS DB by Protein ID:NP_001138230Link to BLAST:NP_001138230.1
Original member Current member NCBI NM_015157.4 NP_055972.1 Accepted alive Link to Nucleotide Sequence:NM_015157.4Link to Protein Sequence:NP_055972.1Re-query CCDS DB by Nucleotide ID:NM_015157Re-query CCDS DB by Protein ID:NP_055972Link to BLAST:NP_055972.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138230.1 1377 Q86UU1-1 1377 100% 0 0
NP_055972.1 1377 Q86UU1-1 1377 100% 0 0

Chromosomal Locations for CCDS 8401.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 118613837 118613896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118614559 118614682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118616041 118616211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118624934 118625059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118627305 118628650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118631207 118631479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118631913 118632053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118632159 118632296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118635393 118635548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118638891 118639001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118639162 118639251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118642254 118642394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118643800 118643940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118644072 118644174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118645356 118645650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118645735 118645825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118647930 118648076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118650077 118650193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118650445 118650547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118655605 118655690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118655860 118655892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118656683 118656823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4134 nt):
ATGGACGCTCTCAATAGGAACCAAATAGGCCCTGGATGCCAGACCCAGACCATGGTGCAGAAAGGACCCT
TGGACCTGATCGAGACAGGCAAAGGGCTGAAAGTGCAAACGGACAAACCCCACCTGGTGAGCCTGGGCAG
TGGGCGACTCAGCACAGCCATCACCCTCCTGCCGCTGGAGGAAGGGAGGACGGTGATTGGCTCTGCAGCC
AGAGACATCTCACTACAGGGCCCAGGCCTGGCTCCAGAGCACTGCTACATCGAGAACCTGCGGGGCACCC
TCACCCTCTACCCCTGTGGCAATGCCTGCACTATTGATGGGCTCCCTGTCCGGCAGCCTACCCGGCTCAC
TCAGGGCTGCATGTTGTGCCTGGGTCAGTCCACCTTCCTTCGCTTTAACCACCCGGCTGAAGCCAAGTGG
ATGAAAAGCATGATTCCAGCAGGGGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGCAGAATCAG
AAAGTCTGGTAAATGGGAACCACACCCCACAGACTGCAACACGGGGACCCTCTGCCTGTGCCAGCCACAG
TTCCCTGGTGAGCTCTATTGAGAAGGACCTGCAAGAGATCATGGACTCACTGGTGCTAGAGGAGCCTGGA
GCTGCTGGCAAGAAGCCTGCCGCAACCTCTCCACTGTCACCGATGGCTAATGGTGGGCGCTACCTGCTGT
CTCCCCCAACCAGCCCCGGCGCCATGTCTGTGGGCTCCAGCTATGAGAACACCTCTCCAGCCTTCTCTCC
ACTCTCTTCACCAGCCAGCAGTGGAAGCTGTGCCAGTCACTCACCCAGTGGGCAAGAGCCAGGACCTTCT
GTGCCCCCGCTGGTACCTGCCCGTTCCTCCAGCTACCATCTGGCCCTACAGCCCCCACAGTCCCGCCCAA
GTGGTGCTCGCTCCGAGAGTCCTCGGCTGAGCAGGAAAGGGGGCCATGAGAGGCCTCCCAGCCCTGGCCT
CCGGGGTCTGCTGACAGACAGCCCTGCAGCTACTGTCTTGGCGGAGGCCCGGAGAGCCACTGAGAGCCCC
CGGCTGGGTGGGCAGCTGCCTGTGGTGGCCATCAGCCTGAGTGAATACCCAGCTTCTGGTGCTCTCAGTC
AACCCACCAGCATTCCTGGCAGCCCCAAGTTTCAGCCTCCAGTCCCTGCTCCCCGAAACAAGATTGGCAC
ACTCCAGGACCGCCCTCCCAGCCCTTTCCGTGAGCCTCCAGGCAGTGAGCGGGTGCTAACAACCAGCCCC
TCACGCCAACTGGTGGGCCGAACATTTTCAGATGGGTTAGCCACCCGTACCCTGCAGCCTCCTGAGAGTC
CCCGCCTGGGCCGGCGGGGCCTGGACAGTATGCGAGAACTACCCCCCTTAAGTCCATCTCTGTCCCGGCG
AGCTCTCTCCCCGCTGCCCACCCGGACCACCCCAGATCCCAAGCTAAACAGGGAAGTGGCAGAGAGTCCT
CGGCCCCGGCGCTGGGCAGCCCATGGGGCTTCACCAGAGGACTTCTCCCTGACGCTGGGGGCACGGGGCC
GTAGGACACGGAGCCCCTCACCCACACTGGGTGAGTCTCTGGCACCCCACAAGGGCAGCTTCAGTGGCAG
GCTGAGCCCAGCCTACAGTCTGGGCTCTCTTACTGGGGCTTCACCCTGCCAGAGTCCCTGTGTCCAGAGG
AAGCTCTCCAGCGGGGACTTGCGGGTGCCTGTCACAAGGGAGCGGAAAAATAGCATCACAGAGATCAGTG
ACAATGAGGACGACCTCCTGGAGTACCACCGGCGACAGCGCCAAGAGCGGCTCCGGGAGCAGGAGATGGA
GAGGCTGGAACGCCAGCGCCTGGAGACCATCCTGAACCTGTGTGCCGAATACAGCCGGGCTGATGGGGGA
CCTGAGGCTGGGGAGCTTCCCAGCATTGGGGAGGCCACCGCAGCATTGGCACTGGCAGGCCGGAGGCCCT
CACGAGGCCTTGCAGGGGCCTCTGGGCGGAGCAGCGAGGAGCCTGGCGTTGCCACCCAACGCCTATGGGA
GAGTATGGAGCGCTCAGATGAGGAAAATCTCAAGGAGGAGTGCAGCAGCACTGAGAGCACCCAGCAGGAG
CACGAAGATGCACCTAGCACCAAGCTCCAGGGAGAGGTGCTAGCCCTGGAAGAAGAGCGGGCTCAGGTGC
TGGGGCACGTGGAGCAGCTCAAGGTCCGTGTGAAGGAGCTAGAGCAGCAGCTGCAGGAGTCAGCCCGAGA
GGCCGAAATGGAGCGGGCACTGCTGCAGGGAGAGAGGGAGGCAGAGCGGGCACTGCTGCAGAAGGAGCAG
AAGGCAGTGGATCAGCTGCAGGAGAAGCTGGTGGCCTTGGAGACAGGCATCCAGAAGGAGAGGGACAAGG
AGGCAGAGGCCCTGGAGACTGAGACAAAGCTCTTTGAGGACTTGGAGTTCCAGCAGTTGGAGCGGGAGAG
CCGCGTGGAGGAGGAGCGCGAGCTGGCCGGCCAGGGGCTGCTCCGGAGCAAGGCTGAGCTGCTCCGCAGC
ATCGCCAAGAGGAAGGAGCGCCTGGCCATCCTGGACAGTCAGGCTGGGCAGATCCGGGCTCAGGCCGTGC
AGGAATCAGAACGCCTGGCCCGGGACAAGAATGCCTCCTTACAGCTGCTGCAAAAGGAGAAGGAGAAGCT
GACTGTGCTGGAAAGGAGATACCACTCACTCACAGGGGGCAGGCCTTTCCCGAAGACCACATCGACCCTC
AAAGAGATGGAGAAGCTGCTGCTCCCTGCTGTAGACTTAGAGCAGTGGTACCAGGAGCTGATGGCCGGGC
TGGGGACTGGCCCCGCTGCAGCCTCCCCTCACTCTTCTCCCCCGCCTCTGCCCGCCAAAGCTTCCCGTCA
GCTGCAGGTTTACCGCTCCAAGATGGATGGCGAGGCCACCAGCCCCCTTCCCCGGACCCGCAGCGGCCCC
CTCCCCTCCTCCTCTGGCTCTTCCTCCTCCTCCTCCCAGCTCAGCGTGGCTACCCTGGGGCGTAGCCCCT
CCCCAAAGAGCGCTCTACTCACCCAGAATGGCACGGGCAGCCTTCCTCGCAACCTGGCAGCCACACTGCA
GGACATCGAGACCAAGCGCCAACTAGCTCTGCAGCAGAAGGGACAACAAGTGATTGAAGAGCAGCGGCGG
CGACTGGCTGAGCTGAAGCAGAAAGCGGCAGCTGAGGCACAGTGCCAGTGGGATGCCCTTCACGGGGCAG
CACCCTTCCCAGCGGGCCCCTCGGGCTTCCCCCCTCTCATGCACCACTCTATCCTACACCACCTGCCTGC
GGGGCGGGAGCGTGGGGAGGAGGGTGAGCACGCCTATGATACGCTGAGTCTGGAGAGCTCTGACAGCATG
GAGACCAGCATCTCCACCGGGGGCAACTCGGCCTGCTCCCCTGACAACATGTCCAGCGCGAGTGGTCTGG
ACATGGGGAAGATCGAGGAGATGGAGAAGATGCTGAAAGAGGCTCATGCAGAGAAGAACCGGCTCATGGA
GTCGAGGGAGCGGGAGATGGAGCTGCGGCGGCAGGCCCTGGAGGAGGAGCGGCGGAGGCGTGAGCAGGTA
GAACGGAGGCTGCAGAGTGAGAGTGCCCGGAGGCAGCAGCTGGTCGAGAAGGAGGTCAAGATGCGGGAGA
AACAATTTTCCCAGGCACGACCCCTGACCCGCTACCTGCCAATCCGGAAGGAGGACTTTGACCTGAAGAC
ACATATTGAGTCATCGGGCCATGGTGTTGATACCTGCCTGCACGTGGTGCTCAGCAGCAAGGTCTGCCGT
GGCTACTTGGTCAAGATGGGCGGCAAGATTAAATCATGGAAGAAGCGCTGGTTTGTCTTCGACCGGCTCA
AGCGCACCCTTTCCTATTATGTGGACAAGCATGAGACGAAGCTGAAGGGAGTCATCTATTTCCAGGCCAT
TGAGGAAGTGTACTACGACCACCTGCGCAGTGCAGCCAAGAAGAGGTTTTTCCGCTTCACTATGGTGACT
GAGAGCCCGAACCCAGCCCTCACCTTCTGCGTAAAGACCCATGACCGGCTGTACTACATGGTGGCCCCAT
CTGCAGAGGCCATGCGTATCTGGATGGATGTCATTGTCACAGGGGCTGAGGGCTACACTCAGTTCATGAA
CTAA

Translation (1377 aa):
MDALNRNQIGPGCQTQTMVQKGPLDLIETGKGLKVQTDKPHLVSLGSGRLSTAITLLPLEEGRTVIGSAA
RDISLQGPGLAPEHCYIENLRGTLTLYPCGNACTIDGLPVRQPTRLTQGCMLCLGQSTFLRFNHPAEAKW
MKSMIPAGGRAPGPPYSPVPAESESLVNGNHTPQTATRGPSACASHSSLVSSIEKDLQEIMDSLVLEEPG
AAGKKPAATSPLSPMANGGRYLLSPPTSPGAMSVGSSYENTSPAFSPLSSPASSGSCASHSPSGQEPGPS
VPPLVPARSSSYHLALQPPQSRPSGARSESPRLSRKGGHERPPSPGLRGLLTDSPAATVLAEARRATESP
RLGGQLPVVAISLSEYPASGALSQPTSIPGSPKFQPPVPAPRNKIGTLQDRPPSPFREPPGSERVLTTSP
SRQLVGRTFSDGLATRTLQPPESPRLGRRGLDSMRELPPLSPSLSRRALSPLPTRTTPDPKLNREVAESP
RPRRWAAHGASPEDFSLTLGARGRRTRSPSPTLGESLAPHKGSFSGRLSPAYSLGSLTGASPCQSPCVQR
KLSSGDLRVPVTRERKNSITEISDNEDDLLEYHRRQRQERLREQEMERLERQRLETILNLCAEYSRADGG
PEAGELPSIGEATAALALAGRRPSRGLAGASGRSSEEPGVATQRLWESMERSDEENLKEECSSTESTQQE
HEDAPSTKLQGEVLALEEERAQVLGHVEQLKVRVKELEQQLQESAREAEMERALLQGEREAERALLQKEQ
KAVDQLQEKLVALETGIQKERDKEAEALETETKLFEDLEFQQLERESRVEEERELAGQGLLRSKAELLRS
IAKRKERLAILDSQAGQIRAQAVQESERLARDKNASLQLLQKEKEKLTVLERRYHSLTGGRPFPKTTSTL
KEMEKLLLPAVDLEQWYQELMAGLGTGPAAASPHSSPPPLPAKASRQLQVYRSKMDGEATSPLPRTRSGP
LPSSSGSSSSSSQLSVATLGRSPSPKSALLTQNGTGSLPRNLAATLQDIETKRQLALQQKGQQVIEEQRR
RLAELKQKAAAEAQCQWDALHGAAPFPAGPSGFPPLMHHSILHHLPAGRERGEEGEHAYDTLSLESSDSM
ETSISTGGNSACSPDNMSSASGLDMGKIEEMEKMLKEAHAEKNRLMESREREMELRRQALEEERRRREQV
ERRLQSESARRQQLVEKEVKMREKQFSQARPLTRYLPIRKEDFDLKTHIESSGHGVDTCLHVVLSSKVCR
GYLVKMGGKIKSWKKRWFVFDRLKRTLSYYVDKHETKLKGVIYFQAIEEVYYDHLRSAAKKRFFRFTMVT
ESPNPALTFCVKTHDRLYYMVAPSAEAMRIWMDVIVTGAEGYTQFMN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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