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Report for CCDS892.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
892.1 Public Homo sapiens 1 TTF2 24 110 108 CCDS HistoryNCBI Gene:8458Re-query CCDS DB by CCDS ID:892.1Re-query CCDS DB by GeneID:8458See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 892.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369466.9 ENSP00000358478.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369466.9Link to Ensembl Protein Viewer:ENSP00000358478.3Re-query CCDS DB by Nucleotide ID:ENST00000369466Re-query CCDS DB by Protein ID:ENSP00000358478
Original member Current member NCBI NM_003594.4 NP_003585.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003594.4Link to Protein Sequence:NP_003585.3Re-query CCDS DB by Nucleotide ID:NM_003594Re-query CCDS DB by Protein ID:NP_003585Link to BLAST:NP_003585.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003585.3 1162 Q9UNY4-1 1162 100% 0 0

Chromosomal Locations for CCDS 892.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 117060347 117060374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117060455 117060557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117062387 117062473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117073661 117073727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117074870 117075859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117076180 117076294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117076641 117076823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117077916 117078043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117079568 117079649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117081828 117081947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117084018 117084168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117086417 117086522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117088801 117088982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117090055 117090208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117090532 117090623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117091328 117091410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117091817 117091950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117092731 117092901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117095309 117095367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117096149 117096299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117097351 117097433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117098833 117098907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117101380 117101524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3489 nt):
ATGGAAGAAGTTAGGTGTCCAGAGCACGGGACTTTCTGCTTTCTTAAGACCGGCGTCCGCGATGGCCCGA
ATAAAGGAAAGAGCTTCTACGTGTGCCGGGCAGACACGTGCAGCTTCGTGCGGGCCACCGACATTCCTGT
TTCCCATTGCTTATTGCATGAGGACTTTGTGGTAGAGCTTCAGGGTTTGCTTCTGCCACAGGACAAGAAA
GAATACAGATTGTTCTTCCGATGCATTAGAAGTAAGGCAGAGGGGAAACGCTGGTGTGGAAGTATTCCAT
GGCAGGATCCTGATTCCAAAGAACATTCTGTATCCAATAAGTCTCAGCATGCATCTGAGACATTTCATCA
TTCTTCCAACTGGCTGAGAAATCCATTCAAGGTACTTGACAAGAATCAAGAACCAGCTCTCTGGAAACAG
CTCATCAAAGGTGAAGGTGAGGAAAAGAAGGCTGATAAGAAGCAAAGAGAAAAGGGAGATCAGCTTTTCG
ATCAAAAGAAAGAACAGAAGCCTGAAATGATGGAGAAAGACCTCTCATCTGGCCTGGTACCAAAGAAAAA
ACAATCTGTAGTTCAAGAGAAGAAGCAAGAAGAGGGAGCAGAGATTCAGTGTGAGGCAGAGACTGGAGGC
ACACACAAAAGAGACTTTTCTGAAATTAAATCTCAACAGTGCCAAGGTAATGAGCTTACAAGACCATCTG
CATCTTCTCAGGAGAAATCAAGTGGTAAGAGTCAAGATGTCCAAAGAGAATCAGAACCTCTGAGAGAAAA
GGTTACCCAGCTTTTGCCTCAAAATGTTCACAGTCACAACTCAATAAGCAAGCCCCAGAAAGGGGGACCC
CTCAACAAGGAGTACACGAACTGGGAGGCTAAAGAAACAAAGGCAAAGGATGGCCCTAGCATACAGGCCA
CCCAGAAAAGCCTGCCTCAGGGGCATTTCCAAGAGCGGCCGGAGACCCACAGTGTGCCTGCTCCTGGAGG
ACCAGCGGCTCAGGCTGCACCAGCAGCACCAGGGCTTTCCCTGGGTGAGGGCCGTGAAGCTGCCACAAGC
AGTGACGACGAGGAGGAAGATGATGTTGTTTTTGTTTCCTCTAAGCCTGGGAGCCCCCTACTCTTTGACT
CGACTCTGGACTTAGAGACGAAGGAAAACCTCCAATTCCCTGATCGAAGTGTGCAAAGAAAGGTGTCTCC
TGCCTCAGGTGTTTCCAAGAAGGTAGAACCCTCAGACCCAGTAGCCCGGCGTGTCTACCTTACAACACAA
CTGAAACAAAAGAAGAGCACACTGGCATCAGTGAACATCCAGGCTCTTCCAGACAAGGGTCAGAAGTTGA
TCAAACAAATCCAGGAGCTGGAGGAAGTACTCAGTGGTCTTACCCTTTCCCCAGAGCAAGGAACTAATGA
GAAGAGTAACAGTCAAGTACCACAGCAGAGTCACTTCACCAAAACTACCACTGGCCCTCCCCACCTGGTG
CCTCCCCAACCCCTTCCTCGTCGTGGTACCCAACCTGTGGGTTCTCTAGAACTAAAGTCTGCCTGCCAGG
TGACTGCTGGAGGATCCAGTCAGTGCTATCGAGGCCATACAAACCAAGATCACGTTCATGCAGTGTGGAA
AATCACAAGTGAAGCCATCGGTCAACTGCATCGCTCACTTGAGTCATGTCCTGGTGAGACGGTTGTGGCA
GAAGATCCCGCCGGGCTGAAGGTCCCTTTGCTACTACACCAGAAGCAGGCATTGGCTTGGTTACTATGGC
GAGAAAGTCAGAAGCCACAAGGAGGAATTCTGGCAGATGATATGGGCTTAGGAAAAACCCTGACAATGAT
TGCGCTCATCCTGACCCAGAAGAATCAAGAGAAAAAGGAAGAAAAGGAGAAAAGCACAGCTTTGACGTGG
CTCTCCAAAGATGACTCTTGTGACTTTACTTCCCATGGAACACTAATCATCTGTCCTGCCTCCCTGATCC
ATCATTGGAAAAATGAGGTGGAGAAACGGGTGAACAGCAACAAACTAAGAGTCTATCTCTACCATGGGCC
AAACCGGGATTCACGTGCCAGAGTCCTCTCTACATATGACATCGTGATCACTACCTATAGCCTCGTGGCC
AAGGAGATTCCCACAAACAAGCAAGAGGCAGAGATCCCAGGTGCAAACCTCAATGTGGAGGGCACCTCAA
CACCTTTGCTTCGAATAGCCTGGGCTCGAATCATATTGGATGAAGCTCACAATGTTAAGAATCCCCGAGT
GCAGACTTCCATAGCTGTGTGTAAGCTACAAGCCTGTGCCCGTTGGGCTGTCACTGGAACCCCCATTCAA
AACAACTTATTGGATATGTATTCGCTGCTGAAGTTTCTCCGTTGCTCTCCATTTGATGAGTTCAATCTGT
GGAGGAGTCAGGTTGACAATGGCTCAAAGAAAGGAGGAGAACGGTTAAGTATTTTAACCAAGAGCCTTTT
GCTGAGGAGAACAAAAGACCAGCTGGACTCTACTGGCAGACCTTTGGTGATACTGCCCCAGCGTAAATTT
CAGTTGCACCATTTAAAGCTTTCTGAAGATGAAGAGACTGTTTACAATGTGTTTTTTGCAAGATCAAGGT
CAGCTCTGCAATCCTATCTAAAAAGACATGAAAGTAGAGGCAACCAATCTGGAAGAAGCCCTAATAATCC
ATTCAGTAGAGTGGCACTGGAGTTTGGGTCTGAGGAGCCTAGACACTCGGAGGCAGCAGACTCACCGAGA
TCCAGCACCGTCCACATACTGTCCCAGTTGCTGAGACTCCGCCAGTGTTGCTGTCATCTTTCTTTACTGA
AGTCGGCCCTGGATCCAATGGAACTGAAGGGTGAAGGTCTTGTCCTTTCCCTGGAAGAACAGCTCAGTGC
TTTGACCTTGTCAGAACTCCGTGACTCAGAGCCATCTTCCACTGTTTCCCTTAACGGCACCTTCTTCAAG
ATGGAGCTTTTTGAAGGCATGCGAGAGAGCACCAAGATTTCATCTCTGTTGGCAGAATTGGAGGCAATTC
AAAGAAATTCAGCATCCCAAAAGAGTGTCATTGTCTCTCAGTGGACCAACATGCTGAAAGTTGTAGCATT
GCACCTGAAGAAGCATGGACTGACTTATGCCACCATCGATGGCTCTGTCAATCCCAAGCAGAGAATGGAC
TTGGTAGAGGCATTTAACCACTCCAGAGGCCCTCAGGTAATGCTAATCTCTCTCTTGGCCGGAGGTGTTG
GTCTAAACCTGACTGGAGGAAATCACCTCTTTCTTTTGGACATGCACTGGAATCCATCACTTGAAGATCA
AGCTTGTGACCGAATTTACCGAGTAGGGCAGCAGAAAGATGTTGTCATACACAGATTTGTTTGTGAGGGA
ACAGTAGAAGAAAAGATCTTACAGCTCCAAGAAAAAAAGAAAGATTTGGCCAAACAAGTTCTATCAGGGT
CTGGAGAATCTGTCACCAAGCTCACCTTGGCTGACCTCAGAGTCCTTTTTGGCATCTAA

Translation (1162 aa):
MEEVRCPEHGTFCFLKTGVRDGPNKGKSFYVCRADTCSFVRATDIPVSHCLLHEDFVVELQGLLLPQDKK
EYRLFFRCIRSKAEGKRWCGSIPWQDPDSKEHSVSNKSQHASETFHHSSNWLRNPFKVLDKNQEPALWKQ
LIKGEGEEKKADKKQREKGDQLFDQKKEQKPEMMEKDLSSGLVPKKKQSVVQEKKQEEGAEIQCEAETGG
THKRDFSEIKSQQCQGNELTRPSASSQEKSSGKSQDVQRESEPLREKVTQLLPQNVHSHNSISKPQKGGP
LNKEYTNWEAKETKAKDGPSIQATQKSLPQGHFQERPETHSVPAPGGPAAQAAPAAPGLSLGEGREAATS
SDDEEEDDVVFVSSKPGSPLLFDSTLDLETKENLQFPDRSVQRKVSPASGVSKKVEPSDPVARRVYLTTQ
LKQKKSTLASVNIQALPDKGQKLIKQIQELEEVLSGLTLSPEQGTNEKSNSQVPQQSHFTKTTTGPPHLV
PPQPLPRRGTQPVGSLELKSACQVTAGGSSQCYRGHTNQDHVHAVWKITSEAIGQLHRSLESCPGETVVA
EDPAGLKVPLLLHQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTQKNQEKKEEKEKSTALTW
LSKDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNRDSRARVLSTYDIVITTYSLVA
KEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAHNVKNPRVQTSIAVCKLQACARWAVTGTPIQ
NNLLDMYSLLKFLRCSPFDEFNLWRSQVDNGSKKGGERLSILTKSLLLRRTKDQLDSTGRPLVILPQRKF
QLHHLKLSEDEETVYNVFFARSRSALQSYLKRHESRGNQSGRSPNNPFSRVALEFGSEEPRHSEAADSPR
SSTVHILSQLLRLRQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTLSELRDSEPSSTVSLNGTFFK
MELFEGMRESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGSVNPKQRMD
LVEAFNHSRGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQQKDVVIHRFVCEG
TVEEKILQLQEKKKDLAKQVLSGSGESVTKLTLADLRVLFGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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