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Report for CCDS7958.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7958.1 Public Homo sapiens 11 SLC43A1 24 110 108 CCDS HistoryNCBI Gene:8501Re-query CCDS DB by CCDS ID:7958.1Re-query CCDS DB by GeneID:8501See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7958.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000278426.8 ENSP00000278426.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000278426.8Link to Ensembl Protein Viewer:ENSP00000278426.3Re-query CCDS DB by Nucleotide ID:ENST00000278426Re-query CCDS DB by Protein ID:ENSP00000278426
Original member Current member EBI ENST00000528450.5 ENSP00000435673.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000528450.5Link to Ensembl Protein Viewer:ENSP00000435673.1Re-query CCDS DB by Nucleotide ID:ENST00000528450Re-query CCDS DB by Protein ID:ENSP00000435673
Original member Current member NCBI NM_001198810.2 NP_001185739.1 Accepted alive Link to Nucleotide Sequence:NM_001198810.2Link to Protein Sequence:NP_001185739.1Re-query CCDS DB by Nucleotide ID:NM_001198810Re-query CCDS DB by Protein ID:NP_001185739Link to BLAST:NP_001185739.1
Original member Current member NCBI NM_003627.6 NP_003618.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003627.6Link to Protein Sequence:NP_003618.1Re-query CCDS DB by Nucleotide ID:NM_003627Re-query CCDS DB by Protein ID:NP_003618Link to BLAST:NP_003618.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185739.1 559 O75387-1 559 100% 0 0
NP_003618.1 559 O75387-1 559 100% 0 0

Chromosomal Locations for CCDS 7958.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 57485096 57485242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57487095 57487218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57488916 57488989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57489251 57489392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57491224 57491362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57491591 57491626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57491716 57491862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57493993 57494171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57496031 57496164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57497753 57497845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57500779 57500855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57500988 57501043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57501152 57501329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57513958 57514111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1680 nt):
ATGGCCCCCACGCTGCAACAGGCGTACCGGAGGCGCTGGTGGATGGCCTGCACGGCTGTGCTGGAGAACC
TCTTCTTCTCTGCTGTACTCCTGGGCTGGGGCTCCCTGTTGATCATTCTGAAGAACGAGGGCTTCTATTC
CAGCACGTGCCCAGCTGAGAGCAGCACCAACACCACCCAGGATGAGCAGCGCAGGTGGCCAGGCTGTGAC
CAGCAGGACGAGATGCTCAACCTGGGCTTCACCATTGGTTCCTTCGTGCTCAGCGCCACCACCCTGCCAC
TGGGGATCCTCATGGACCGCTTTGGCCCCCGACCCGTGCGGCTGGTTGGCAGTGCCTGCTTCACTGCGTC
CTGCACCCTCATGGCCCTGGCCTCCCGGGACGTGGAAGCTCTGTCTCCGTTGATATTCCTGGCGCTGTCC
CTGAATGGCTTTGGTGGCATCTGCCTAACGTTCACTTCACTCACGCTGCCCAACATGTTTGGGAACCTGC
GCTCCACGTTAATGGCCCTCATGATTGGCTCTTACGCCTCTTCTGCCATTACGTTCCCAGGAATCAAGCT
GATCTACGATGCCGGTGTGGCCTTCGTGGTCATCATGTTCACCTGGTCTGGCCTGGCCTGCCTTATCTTT
CTGAACTGCACCCTCAACTGGCCCATCGAAGCCTTTCCTGCCCCTGAGGAAGTCAATTACACGAAGAAGA
TCAAGCTGAGTGGGCTGGCCCTGGACCACAAGGTGACAGGTGACCTCTTCTACACCCATGTGACCACCAT
GGGCCAGAGGCTCAGCCAGAAGGCCCCCAGCCTGGAGGACGGTTCGGATGCCTTCATGTCACCCCAGGAT
GTTCGGGGCACCTCAGAAAACCTTCCTGAGAGGTCTGTCCCCTTACGCAAGAGCCTCTGCTCCCCCACTT
TCCTGTGGAGCCTCCTCACCATGGGCATGACCCAGCTGCGGATCATCTTCTACATGGCTGCTGTGAACAA
GATGCTGGAGTACCTTGTGACTGGTGGCCAGGAGCATGAGACAAATGAACAGCAACAAAAGGTGGCAGAG
ACAGTTGGGTTCTACTCCTCCGTCTTCGGGGCCATGCAGCTGTTGTGCCTTCTCACCTGCCCCCTCATTG
GCTACATCATGGACTGGCGGATCAAGGACTGCGTGGACGCCCCAACTCAGGGCACTGTCCTCGGAGATGC
CAGGGACGGGGTTGCTACCAAATCCATCAGACCACGCTACTGCAAGATCCAAAAGCTCACCAATGCCATC
AGTGCCTTCACCCTGACCAACCTGCTGCTTGTGGGTTTTGGCATCACCTGTCTCATCAACAACTTACACC
TCCAGTTTGTGACCTTTGTCCTGCACACCATTGTTCGAGGTTTCTTCCACTCAGCCTGTGGGAGTCTCTA
TGCTGCAGTGTTCCCATCCAACCACTTTGGGACGCTGACAGGCCTGCAGTCCCTCATCAGTGCTGTGTTC
GCCTTGCTTCAGCAGCCACTTTTCATGGCGATGGTGGGACCCCTGAAAGGAGAGCCCTTCTGGGTGAATC
TGGGCCTCCTGCTATTCTCACTCCTGGGATTCCTGTTGCCTTCCTACCTCTTCTATTACCGTGCCCGGCT
CCAGCAGGAGTACGCCGCCAATGGGATGGGCCCACTGAAGGTGCTTAGCGGCTCTGAGGTGACCGCATAG

Translation (559 aa):
MAPTLQQAYRRRWWMACTAVLENLFFSAVLLGWGSLLIILKNEGFYSSTCPAESSTNTTQDEQRRWPGCD
QQDEMLNLGFTIGSFVLSATTLPLGILMDRFGPRPVRLVGSACFTASCTLMALASRDVEALSPLIFLALS
LNGFGGICLTFTSLTLPNMFGNLRSTLMALMIGSYASSAITFPGIKLIYDAGVAFVVIMFTWSGLACLIF
LNCTLNWPIEAFPAPEEVNYTKKIKLSGLALDHKVTGDLFYTHVTTMGQRLSQKAPSLEDGSDAFMSPQD
VRGTSENLPERSVPLRKSLCSPTFLWSLLTMGMTQLRIIFYMAAVNKMLEYLVTGGQEHETNEQQQKVAE
TVGFYSSVFGAMQLLCLLTCPLIGYIMDWRIKDCVDAPTQGTVLGDARDGVATKSIRPRYCKIQKLTNAI
SAFTLTNLLLVGFGITCLINNLHLQFVTFVLHTIVRGFFHSACGSLYAAVFPSNHFGTLTGLQSLISAVF
ALLQQPLFMAMVGPLKGEPFWVNLGLLLFSLLGFLLPSYLFYYRARLQQEYAANGMGPLKVLSGSEVTA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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