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Report for CCDS9103.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9103.1 Public Homo sapiens 12 CKAP4 24 110 108 CCDS HistoryNCBI Gene:10970Re-query CCDS DB by CCDS ID:9103.1Re-query CCDS DB by GeneID:10970See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9103.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378026.5 ENSP00000367265.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378026.5Link to Ensembl Protein Viewer:ENSP00000367265.4Re-query CCDS DB by Nucleotide ID:ENST00000378026Re-query CCDS DB by Protein ID:ENSP00000367265
Original member Current member NCBI NM_006825.4 NP_006816.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006825.4Link to Protein Sequence:NP_006816.2Re-query CCDS DB by Nucleotide ID:NM_006825Re-query CCDS DB by Protein ID:NP_006816Link to BLAST:NP_006816.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006816.2 602 Q07065 602 100% 0 0

Chromosomal Locations for CCDS 9103.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 106239024 106240349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106247369 106247851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1809 nt):
ATGCCCTCGGCCAAACAAAGGGGCTCCAAGGGCGGCCACGGCGCCGCGAGCCCCTCGGAGAAGGGTGCCC
ACCCGTCGGGCGGCGCGGATGACGTGGCGAAGAAGCCGCCGCCGGCGCCGCAGCAGCCGCCGCCGCCGCC
CGCGCCGCACCCGCAGCAGCACCCGCAGCAGCACCCGCAGAACCAGGCGCACGGCAAGGGCGGCCACCGC
GGCGGCGGCGGCGGCGGCGGCAAGTCCTCCTCCTCCTCCTCCGCCTCCGCCGCCGCTGCCGCCGCCGCCG
CCTCGTCCTCGGCGTCCTGCTCGCGCAGGCTCGGCAGGGCGCTCAACTTTCTCTTCTACCTCGCCCTGGT
GGCGGCGGCCGCTTTCTCGGGCTGGTGCGTCCACCACGTCCTGGAGGAGGTCCAGCAGGTCCGGCGCAGC
CACCAGGACTTCTCCCGGCAGAGGGAGGAGCTGGGCCAGGGCTTGCAGGGCGTCGAGCAGAAGGTGCAGT
CTTTGCAAGCCACATTTGGAACTTTTGAGTCCATCTTGAGAAGCTCCCAACATAAACAAGACCTCACAGA
GAAAGCTGTGAAGCAAGGGGAGAGTGAGGTCAGCCGGATCAGCGAAGTGCTGCAGAAACTCCAGAATGAG
ATTCTCAAAGACCTCTCGGATGGGATCCATGTGGTGAAGGACGCCCGGGAGCGGGACTTCACGTCCCTGG
AGAACACGGTGGAGGAGCGGCTGACGGAGCTCACCAAATCCATCAACGACAACATCGCCATCTTCACAGA
AGTCCAGAAGAGGAGCCAGAAGGAGATCAATGACATGAAGGCAAAGGTTGCCTCCCTGGAAGAATCTGAG
GGGAACAAGCAGGATTTGAAAGCCTTAAAGGAAGCTGTGAAGGAGATACAGACCTCAGCCAAGTCCAGAG
AGTGGGACATGGAGGCCCTGAGAAGTACCCTTCAGACTATGGAGTCTGACATCTACACCGAGGTCCGCGA
GCTGGTGAGCCTCAAGCAGGAGCAGCAGGCTTTCAAGGAGGCGGCCGACACGGAGCGGCTCGCCCTGCAG
GCCCTCACGGAGAAGCTTCTCAGGTCTGAGGAGTCCGTCTCCCGCCTCCCGGAGGAGATCCGGAGACTGG
AGGAAGAGCTCCGCCAGCTGAAGTCCGATTCCCACGGGCCGAAGGAGGACGGAGGCTTCAGACACTCGGA
AGCCTTTGAGGCACTCCAGCAAAAGAGTCAGGGACTGGACTCCAGGCTCCAGCACGTGGAGGATGGGGTG
CTCTCCATGCAGGTGGCTTCTGCGCGCCAGACCGAGAGCCTGGAGTCCCTCCTGTCCAAGAGCCAGGAGC
ACGAGCAGCGCCTGGCCGCCCTGCAGGGGCGCCTGGAAGGCCTCGGGTCCTCAGAGGCAGACCAGGATGG
CCTGGCCAGCACGGTGAGGAGCCTGGGCGAGACCCAGCTGGTGCTCTACGGTGACGTGGAGGAGCTGAAG
AGGAGTGTGGGCGAGCTCCCCAGCACCGTGGAATCACTCCAGAAGGTGCAGGAGCAGGTGCACACGCTGC
TCAGTCAGGACCAAGCCCAGGCCGCCCGTCTGCCTCCTCAGGACTTCCTGGACAGACTTTCTTCTCTAGA
CAACCTGAAAGCCTCAGTCAGCCAAGTGGAGGCGGACTTGAAAATGCTCAGGACTGCTGTGGACAGTTTG
GTTGCATACTCGGTCAAAATAGAAACCAACGAGAACAATCTGGAATCAGCCAAGGGTTTACTAGATGACC
TGAGGAATGATCTGGATAGGTTGTTTGTGAAAGTGGAGAAGATTCACGAAAAGGTCTAA

Translation (602 aa):
MPSAKQRGSKGGHGAASPSEKGAHPSGGADDVAKKPPPAPQQPPPPPAPHPQQHPQQHPQNQAHGKGGHR
GGGGGGGKSSSSSSASAAAAAAAASSSASCSRRLGRALNFLFYLALVAAAAFSGWCVHHVLEEVQQVRRS
HQDFSRQREELGQGLQGVEQKVQSLQATFGTFESILRSSQHKQDLTEKAVKQGESEVSRISEVLQKLQNE
ILKDLSDGIHVVKDARERDFTSLENTVEERLTELTKSINDNIAIFTEVQKRSQKEINDMKAKVASLEESE
GNKQDLKALKEAVKEIQTSAKSREWDMEALRSTLQTMESDIYTEVRELVSLKQEQQAFKEAADTERLALQ
ALTEKLLRSEESVSRLPEEIRRLEEELRQLKSDSHGPKEDGGFRHSEAFEALQQKSQGLDSRLQHVEDGV
LSMQVASARQTESLESLLSKSQEHEQRLAALQGRLEGLGSSEADQDGLASTVRSLGETQLVLYGDVEELK
RSVGELPSTVESLQKVQEQVHTLLSQDQAQAARLPPQDFLDRLSSLDNLKASVSQVEADLKMLRTAVDSL
VAYSVKIETNENNLESAKGLLDDLRNDLDRLFVKVEKIHEKV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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