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Report for CCDS14093.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14093.2 Public Homo sapiens 22 LMF2 24 110 108 CCDS HistoryNCBI Gene:91289Re-query CCDS DB by CCDS ID:14093.2Re-query CCDS DB by GeneID:91289See the combined annotation on chromosome 22 in Sequence Viewer

Public Note for CCDS 14093.1
The coding region has been updated to represent an alternative splicing pattern at the 5' end, resulting in a longer protein N-terminus that is more supported by the available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 14093.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000474879.7 ENSP00000424381.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000474879.7Link to Ensembl Protein Viewer:ENSP00000424381.1Re-query CCDS DB by Nucleotide ID:ENST00000474879Re-query CCDS DB by Protein ID:ENSP00000424381
Original member Current member NCBI NM_033200.3 NP_149977.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033200.3Link to Protein Sequence:NP_149977.2Re-query CCDS DB by Nucleotide ID:NM_033200Re-query CCDS DB by Protein ID:NP_149977Link to BLAST:NP_149977.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_149977.2 707 Q9BU23-1 707 100% 0 0

Chromosomal Locations for CCDS 14093.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 50503391 50503699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50503808 50503904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50504340 50504451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50504559 50504727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50504802 50504984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50505057 50505153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50505229 50505334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50505403 50505537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50505674 50505815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50506035 50506213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50506285 50506502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50506638 50506666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50506782 50507035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50507582 50507675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2124 nt):
ATGGCGGGCTCCCGGCTCCCGCGGCAGCTCTTCCTCCAGGGCGTGGCGGCCGTCTTCATGTTTGCTTTCG
CTTCCCTCTACACGCAAATCCCAGGCCTGTATGGCCCCGAGGGCATCCTACCTGCAAGGAGGACGCTGCG
GCCTCAGGGCAAGGGGCGCTGGCAGCAGCTGTGGGAGACCCCGACGCTGCTGTGGGAAGCGCCGAGACTG
GGGCTGGACACGGCCCAGGGCCTGGAGCTGCTGAGCCTGCTGGGTGCACTAGTGGCCCTGGGAGCCCTGC
TGCTGAGCCCACTGCGCCACCCTGTCATCTACTTGCTGCTTTGGGCCGCCTACCTGTCAGCCTGCCAGGT
GGGCCAGGTGTTCCTTTATTTCCAGTGGGACTCCCTGCTGCTAGAGACTGGCTTCCTGGCCGTGCTGGTG
GCCCCGCTGAGGCCAGCCTCCCACCGCAAGGAGGCCCCCCAGGGCAGGCAGGCAGGGGCCCTGCCCCACG
AAGACCTCCCCTTCTGGCTGGTGCGATGGCTGCTGTTCCGCCTCATGTTCGCCTCAGGCGTGGTCAAGCT
GACCAGCCGCTGCCCTGCGTGGTGGGGGCTCACTGCCCTCACCTACCACTACGAGACCCAGTGCCTGCCC
ACGCCCGCCGCCTGGTTCGCACACCACCTGCCGGTCTGGCTGCACAAGCTCAGCGTGGTGGCCACCTTCC
TAATTGAGATCGCTGTGCCGCCCCTGTTCTTCGCCCCCATTCGACGCCTGCGCTTGGCTGCTTTCTACTC
GCAGGTGCTGCTGCAGGTCCTGATTATCATCACCGGCAACTACAACTTCTTCAACCTGATGACGCTGGTG
CTTACCACTGCGCTGCTGGACGACCAGCACCTGGCTGCTGAGCCTGGCCACGGCAGCCGCAAGAAGACGG
CCACCTCCTGGCCCAAGGCCCTGCTGGCCACCCTGTCGCTGCTGCTGGAACTAGCCGTCTACGGGCTTCT
GGCCTATGGCACTGTGCACTACTTTGGCCTGGAGGTTGACTGGCAGCAGCGCACCATCCACTCCAGAACC
ACTTTCACCTTCCACCAGTTTTCTCAGTGGCTGAAGACACTGACGCTGCCCACTGTGTGGCTGGGTGTGG
CCTCCCTGGTCTGGGAGCTGCTGAGTGCCCTGTGGAGGTGGACCCAGGTGCGGGGCTGGCTACGGAAGCT
CAGTGCTGTAGTCCAACTGTCCCTTGTGGGCACTGCGACCGTGGCCTTGTTCCTGATTAGCCTGGTGCCG
TACTCCTACGTGGAGCCCGGGACCCACGGGCGCCTCTGGACCGGGGCCCACCGCCTGTTTGGTGCCGTGG
AGCACCTACAGCTGGCCAACTCCTACGGCCTCTTCCGCCGCATGACTGGGCTTGGTGGACGGCCTGAGGT
GGTGCTGGAGGGCAGTTACGACGGCCACCACTGGACGGAGATCGAGTTCATGTACAAGCCTGGGAACCTG
AGCCGGCCGCCCCCGGTTGTGGTGCCCCACCAGCCACGCCTGGACTGGCAGATGTGGTTTGCAGCCCTGG
GCCCACACACGCACAGCCCGTGGTTCACAAGCCTGGTCTTGCGCCTGCTGCAGGGCAAGGAGCCAGTGAT
CCGCCTTGTCCAGAGCCAAGTGGCCAGGTATCCCTTCCACAAGCAGCCGCCCACCTACGTCCGAGCCCAG
CGCTACAAGTACTGGTTCTCCCAGCCTGGGGAGCAGGGCCAGTGGTGGCGGCGCCAGTGGGTGGAGGAGT
TCTTCCCATCCGTGTCCCTGGGGGACCCCACGCTGGAGACGCTGCTCAGGCAGTTTGGACTACAGGAGAA
AAGCCCACCTCGCACCCGCAGCGCCAACAGCACCCTGGCCCAGGCCCTCCACTGGACTCGCTCTCAGCTG
TCTCCCCTGGAGGCCCCCGCCCTGCTCTGGGGGCTCCTCATGGCCGTGGGGGCTGTCAGATTTGTGCAAG
CCCTGCTAGCACCCTGTTCTCTCCGGTCCTCCCCGCTGGCACCAGTCAGCGGGGAGAAGCGCAGGCCAGC
CTCCCAGAAAGACTCCGGAGCTGCCTCCGAACAGGCCACCGCAGCCCCCAACCCCTGCTCCAGTAGTTCG
AGGACCACCCGGCGAAAGAAGTAG

Translation (707 aa):
MAGSRLPRQLFLQGVAAVFMFAFASLYTQIPGLYGPEGILPARRTLRPQGKGRWQQLWETPTLLWEAPRL
GLDTAQGLELLSLLGALVALGALLLSPLRHPVIYLLLWAAYLSACQVGQVFLYFQWDSLLLETGFLAVLV
APLRPASHRKEAPQGRQAGALPHEDLPFWLVRWLLFRLMFASGVVKLTSRCPAWWGLTALTYHYETQCLP
TPAAWFAHHLPVWLHKLSVVATFLIEIAVPPLFFAPIRRLRLAAFYSQVLLQVLIIITGNYNFFNLMTLV
LTTALLDDQHLAAEPGHGSRKKTATSWPKALLATLSLLLELAVYGLLAYGTVHYFGLEVDWQQRTIHSRT
TFTFHQFSQWLKTLTLPTVWLGVASLVWELLSALWRWTQVRGWLRKLSAVVQLSLVGTATVALFLISLVP
YSYVEPGTHGRLWTGAHRLFGAVEHLQLANSYGLFRRMTGLGGRPEVVLEGSYDGHHWTEIEFMYKPGNL
SRPPPVVVPHQPRLDWQMWFAALGPHTHSPWFTSLVLRLLQGKEPVIRLVQSQVARYPFHKQPPTYVRAQ
RYKYWFSQPGEQGQWWRRQWVEEFFPSVSLGDPTLETLLRQFGLQEKSPPRTRSANSTLAQALHWTRSQL
SPLEAPALLWGLLMAVGAVRFVQALLAPCSLRSSPLAPVSGEKRRPASQKDSGAASEQATAAPNPCSSSS
RTTRRKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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