NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1421.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1421.1 Public Homo sapiens 1 ARL8A 24 110 108 CCDS HistoryNCBI Gene:127829Re-query CCDS DB by CCDS ID:1421.1Re-query CCDS DB by GeneID:127829See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1421.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000272217.7 ENSP00000272217.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000272217.7Link to Ensembl Protein Viewer:ENSP00000272217.2Re-query CCDS DB by Nucleotide ID:ENST00000272217Re-query CCDS DB by Protein ID:ENSP00000272217
Original member Current member NCBI NM_138795.4 NP_620150.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138795.4Link to Protein Sequence:NP_620150.1Re-query CCDS DB by Nucleotide ID:NM_138795Re-query CCDS DB by Protein ID:NP_620150Link to BLAST:NP_620150.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620150.1 186 Q96BM9 186 100% 0 0

Chromosomal Locations for CCDS 1421.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 202134467 202134516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202135150 202135220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202135459 202135526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202135707 202135800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202137965 202138038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202138368 202138448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 202144450 202144572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (561 nt):
ATGATCGCTTTGTTCAACAAGCTGCTGGACTGGTTCAAGGCCCTATTCTGGAAGGAGGAGATGGAGCTCA
CGCTGGTCGGGCTTCAGTACTCGGGCAAGACCACCTTCGTCAACGTGATCGCGTCAGGACAGTTCAACGA
GGACATGATCCCCACCGTGGGTTTCAACATGCGCAAAATCACCAAAGGGAATGTGACTATCAAGCTCTGG
GACATTGGGGGACAGCCGCGTTTCCGCAGCATGTGGGAGCGCTACTGCCGAGGAGTGAGCGCCATCGTGT
ACATGGTGGATGCTGCTGACCAGGAGAAGATTGAGGCCTCTAAGAACGAGCTCCACAACCTACTGGACAA
ACCTCAGCTGCAGGGCATCCCGGTCTTAGTCCTGGGTAACAAGCGAGACCTTCCGGGAGCATTGGATGAG
AAGGAGCTGATTGAGAAAATGAATCTGTCTGCCATCCAGGACCGAGAGATCTGCTGCTACTCCATCTCTT
GCAAAGAAAAGGACAACATTGACATCACCCTACAGTGGCTTATTCAACACTCGAAGTCACGGAGAAGCTG
A

Translation (186 aa):
MIALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLW
DIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDE
KELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH