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Report for CCDS11242.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11242.1 Public Homo sapiens 17 TLCD1 24 110 108 CCDS HistoryNCBI Gene:116238Re-query CCDS DB by CCDS ID:11242.1Re-query CCDS DB by GeneID:116238See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11242.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000292090.8 ENSP00000292090.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000292090.8Link to Ensembl Protein Viewer:ENSP00000292090.3Re-query CCDS DB by Nucleotide ID:ENST00000292090Re-query CCDS DB by Protein ID:ENSP00000292090
Original member Current member NCBI NM_138463.4 NP_612472.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138463.4Link to Protein Sequence:NP_612472.1Re-query CCDS DB by Nucleotide ID:NM_138463Re-query CCDS DB by Protein ID:NP_612472Link to BLAST:NP_612472.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612472.1 247 Q96CP7-1 247 100% 0 0

Chromosomal Locations for CCDS 11242.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 28724510 28724893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28725304 28725386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28725481 28725563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28725904 28726097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGCCCCGACTGCTGCACCCCGCCCTGCCGCTGCTCCTGGGCGCCACGCTGACCTTCCGGGCGCTCCGGC
GC
GCGCTCTGTCGCCTGCCCCTACCCGTGCACGTGCGCGCCGACCCCCTGCGCACCTGGCGCTGGCACAA
C
CTGCTCGTCTCCTTCGCTCACTCCATTGTGTCGGGGATCTGGGCACTGCTGTGTGTATGGCAGACTCCT
GAC
ATGTTAGTGGAGATTGAGACGGCGTGGTCACTTTCTGGCTATTTGCTCGTTTGCTTCTCTGCGGGGT
AT
TTCATCCACGATACGGTGGACATCGTGGCTAGCGGACAGACGCGAGCCTCTTGGGAATACCTTGTCCA
T
CACGTCATGGCCATGGGTGCCTTCTTCTCCGGCATCTTTTGGAGCAGCTTTGTCGGTGGGGGTGTCTTA
ACA
CTACTGGTGGAAGTCAGCAACATCTTCCTCACCATTCGCATGATGATGAAAATCAGTAATGCCCAGG
AT
CATCTCCTCTACCGGGTTAACAAGTATGTGAACCTGGTCATGTACTTTCTCTTCCGCCTGGCCCCTCA
G
GCCTACCTCACCCATTTCTTCTTGCGTTATGTGAACCAGAGGACCCTGGGCACCTTCCTGCTGGGTATC
CTG
CTCATGCTGGACGTGATGATCATAATCTACTTTTCCCGCCTCCTCCGCTCTGACTTCTGCCCTGAGC
AT
GTCCCCAAGAAGCAACACAAAGACAAGTTCTTGACTGAGTGA


Translation (247 aa):
MPRLLHPALPLLLGATLTFRALRRALCRLPLPVHVRADPLRTWRWHNLLVSFAHSIVSGIWALLCVWQTP
D
MLVEIETAWSLSGYLLVCFSA
GYFIHDTVDIVASGQTRASWEYLVHHVMAMGAFFSGIFWSSFVGGGVL
T
LLVEVSNIFLTIRMMMKISNAQDHLLYRVNKYVNLVMYFLFRLAPQAYLTHFFLRYVNQRTLGTFLLGI
L
LMLDVMIIIYFSRLLRSDFCPEHVPKKQHKDKFLTE




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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