NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4925.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4925.1 Public Homo sapiens 6 CENPQ 24 110 108 CCDS HistoryNCBI Gene:55166Re-query CCDS DB by CCDS ID:4925.1Re-query CCDS DB by GeneID:55166See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4925.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335783.4 ENSP00000337289.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000335783.4Link to Ensembl Protein Viewer:ENSP00000337289.2Re-query CCDS DB by Nucleotide ID:ENST00000335783Re-query CCDS DB by Protein ID:ENSP00000337289
Original member Current member NCBI NM_018132.4 NP_060602.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018132.4Link to Protein Sequence:NP_060602.2Re-query CCDS DB by Nucleotide ID:NM_018132Re-query CCDS DB by Protein ID:NP_060602Link to BLAST:NP_060602.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060602.2 268 Q7L2Z9 268 100% 0 0

Chromosomal Locations for CCDS 4925.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 49470177 49470278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49470974 49471028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49472063 49472183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49472790 49472858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49480951 49481080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49488352 49488471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49488607 49488684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49492144 49492275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (807 nt):
ATGTCTGGTAAAGCAAATGCTTCCAAGAAAAACGCTCAACAGTTAAAAAGAAATCCAAAGAGAAAAAAGG
ATAATGAGGAAGTTGTGTTGTCAGAGAATAAGGTTAGAAACACAGTGAAAAAAAATAAAAATCATCTGAA
AGATCTGTCTTCTGAAGGACAAACAAAGCACACTAACCTAAAACACGGAAAGACAGCAGCCAGCAAGAGA
AAAACCTGGCAACCTCTGTCAAAGAGTACCAGAGACCATTTGCAAACTATGATGGAATCAGTAATAATGA
CAATTTTGAGTAACAGTATTAAAGAAAAAGAAGAAATACAATACCATCTCAACTTCCTGAAGAAAAGATT
GCTACAACAGTGTGAAACTCTGAAAGTCCCTCCCAAAAAGATGGAAGATTTAACTAATGTATCAAGTCTA
CTGAATATGGAAAGGGCACGAGACAAAGCTAATGAAGAAGGTCTGGCATTACTACAGGAAGAAATAGATA
AAATGGTAGAGACCACAGAGTTAATGACTGGGAATATTCAGAGCCTAAAGAACAAAATTCAGATTCTGGC
AAGTGAGGTGGAAGAAGAAGAGGAGAGAGTAAAACAGATGCATCAAATAAATAGTAGTGGAGTACTCTCT
CTTCCGGAACTTTCTCAGAAAACTCTCAAAGCACCCACACTTCAGAAAGAAATTTTGGCGCTAATTCCAA
ACCAGAATGCTCTTCTAAAGGACTTGGATATTCTTCATAATTCATCACAGATGAAGAGCATGTCAACCTT
CATTGAAGAAGCCTATAAGAAACTGGATGCATCTTAA

Translation (268 aa):
MSGKANASKKNAQQLKRNPKRKKDNEEVVLSENKVRNTVKKNKNHLKDLSSEGQTKHTNLKHGKTAASKR
KTWQPLSKSTRDHLQTMMESVIMTILSNSIKEKEEIQYHLNFLKKRLLQQCETLKVPPKKMEDLTNVSSL
LNMERARDKANEEGLALLQEEIDKMVETTELMTGNIQSLKNKIQILASEVEEEEERVKQMHQINSSGVLS
LPELSQKTLKAPTLQKEILALIPNQNALLKDLDILHNSSQMKSMSTFIEEAYKKLDAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH