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Report for CCDS12208.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12208.1 Public Homo sapiens 19 ZNF558 24 110 108 CCDS HistoryNCBI Gene:148156Re-query CCDS DB by CCDS ID:12208.1Re-query CCDS DB by GeneID:148156See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12208.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301475.1 ENSP00000301475.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000301475.1Link to Ensembl Protein Viewer:ENSP00000301475.1Re-query CCDS DB by Nucleotide ID:ENST00000301475Re-query CCDS DB by Protein ID:ENSP00000301475
Original member Current member EBI ENST00000601372.6 ENSP00000471277.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000601372.6Link to Ensembl Protein Viewer:ENSP00000471277.1Re-query CCDS DB by Nucleotide ID:ENST00000601372Re-query CCDS DB by Protein ID:ENSP00000471277
Original member Current member NCBI NM_144693.3 NP_653294.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144693.3Link to Protein Sequence:NP_653294.1Re-query CCDS DB by Nucleotide ID:NM_144693Re-query CCDS DB by Protein ID:NP_653294Link to BLAST:NP_653294.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653294.1 402 Q96NG5-1 402 100% 0 0

Chromosomal Locations for CCDS 12208.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 8811281 8812063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8812561 8812643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8813127 8813222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8821180 8821306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8822003 8822091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8822629 8822659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1209 nt):
ATGGCGGCTGTCATCCTGCCCTCGACTGCTGCTCCGTCTTCCCTGTTCCCAGCCTCTCAGCAAAAAGGAC
AC
ACACAGGGCGGAGAGCTGGTTAATGAGCTCCTGACAAGCTGGCTACGGGGCTTGGTAACCTTCGAGGA
T
GTGGCCGTGGAGTTCACCCAGGAGGAGTGGGCGTTGCTGGACCCTGCCCAAAGGACACTGTACAGGGAT
GTG
ATGCTGGAGAACTGCAGGAACCTGGCCTCACTAGGGTGTCGTGTTAATAAACCCAGTCTGATATCCC
AG
TTGGAACAAGACAAGAAGGTGGTGACAGAGGAAAGAGGAATTCTACCAAGCACCTGTCCAGATTTGGA
G
ACTCTACTTAAAGCCAAATGGTTAACTCCTAAGAAGAATGTTTTCAGAAAAGAACAGTCTAAAGGTGTA
AAA
ACGGAAAGAAGTCATCGTGGAGTGAAACTCAATGAATGTAATCAGTGTTTTAAAGTCTTCAGCACGA
AA
TCTAACCTAACTCAGCACAAGAGAATTCATACTGGAGAAAAACCCTATGACTGTAGTCAATGTGGGAA
G
TCCTTCAGTAGCAGATCTTACCTTACTATTCATAAGAGAATCCATAATGGGGAGAAACCCTATGAATGC
AAT
CACTGTGGGAAAGCATTTAGTGATCCCTCATCCCTTAGACTGCATTTGAGAATTCACACTGGAGAAA
AA
CCCTATGAATGTAACCAGTGTTTTCACGTTTTCCGCACCAGTTGTAACCTCAAAAGCCACAAGAGGAT
T
CACACGGGGGAGAATCACCATGAATGTAATCAGTGTGGAAAAGCTTTCAGCACAAGGTCCTCTCTCACT
GGG
CACAATAGCATTCATACAGGGGAGAAACCTTATGAATGTCACGATTGTGGGAAAACCTTCAGGAAGA
GC
TCCTATCTGACACAGCACGTAAGAACTCATACTGGAGAAAAACCCTATGAATGTAACGAGTGTGGGAA
A
TCCTTCAGCAGTAGCTTTTCTCTTACTGTGCACAAGAGAATACATACCGGAGAGAAACCCTACGAGTGC
AGT
GACTGTGGAAAAGCCTTTAATAATCTCTCAGCTGTGAAGAAACACTTAAGAACTCACACTGGAGAAA
AA
CCCTATGAATGTAATCATTGTGGGAAATCCTTCACAAGTAACTCCTATCTTTCTGTGCACAAGAGAAT
A
CATAATAGATGGATATGA


Translation (402 aa):
MAAVILPSTAAPSSLFPASQQKGHTQGGELVNELLTSWLRGLVTFEDVAVEFTQEEWALLDPAQRTLYRD
V
MLENCRNLASL
GCRVNKPSLISQLEQDKKVVTEERGILPSTCPDLETLLKAKWLTPKKNVFRKEQSKGV
K
T
ERSHRGVKLNECNQCFKVFSTKSNLTQHKRIHTGEKPYDCSQCGKSFSSRSYLTIHKRIHNGEKPYEC
N
HCGKAFSDPSSLRLHLRIHTGEKPYECNQCFHVFRTSCNLKSHKRIHTGENHHECNQCGKAFSTRSSLT
G
HNSIHTGEKPYECHDCGKTFRKSSYLTQHVRTHTGEKPYECNECGKSFSSSFSLTVHKRIHTGEKPYEC
S
DCGKAFNNLSAVKKHLRTHTGEKPYECNHCGKSFTSNSYLSVHKRIHNRWI




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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