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Report for CCDS41350.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41350.1 Public Homo sapiens 1 LRRIQ3 24 110 108 CCDS HistoryNCBI Gene:127255Re-query CCDS DB by CCDS ID:41350.1Re-query CCDS DB by GeneID:127255See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 41350.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354431.9 ENSP00000346414.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000354431.9Link to Ensembl Protein Viewer:ENSP00000346414.4Re-query CCDS DB by Nucleotide ID:ENST00000354431Re-query CCDS DB by Protein ID:ENSP00000346414
Original member Current member EBI ENST00000395089.5 ENSP00000378524.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395089.5Link to Ensembl Protein Viewer:ENSP00000378524.1Re-query CCDS DB by Nucleotide ID:ENST00000395089Re-query CCDS DB by Protein ID:ENSP00000378524
Original member Current member NCBI NM_001105659.2 NP_001099129.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001105659.2Link to Protein Sequence:NP_001099129.1Re-query CCDS DB by Nucleotide ID:NM_001105659Re-query CCDS DB by Protein ID:NP_001099129Link to BLAST:NP_001099129.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001099129.1 624 A6PVS8-1 624 100% 0 0

Chromosomal Locations for CCDS 41350.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 74026813 74026969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74041213 74041933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74074661 74074790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74109394 74109553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74155733 74155866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74182538 74182861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74183436 74183684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1875 nt):
ATGTTTCATGGAACAGTCACAGAAGAGCTAACCAGTCATGAAGAATGGAGTCACTATAATGAAAACATAA
GAGAAGGTCAAAAAGATTTTGTTTTTGTGAAGTTCAATGGCCTTCATTTAAAGTCTATGGAAAATTTGCA
GTCTTGCATCTCTCTTAGAGTATGCATCTTCTCAAACAATTTTATTACAGATATTCATCCACTTCAAAGT
TGTATAAAATTAATCAAACTTGATCTCCATGGAAATCAGATAAAGAGTCTACCAAATACCAAATTTTGGA
ATGGATTGAAGAACCTAAAACTACTCTATCTTCATGACAATGGGTTTGCAAAGTTAAAGAATATATGTGT
ATTATCTGCCTGTCCAACCCTCATTGCCCTCACTATGTTTGATTGTCCAGTAAGCCTTAAAAAAGGATAT
AGACATGTTCTTGTTAACAGTATATGGCCTCTCAAAGCGCTGGATCATCATGTGATTTCTGATGAAGAAA
TAATTCAGAACTGGCATCTTCCTGAAAGATTCAAAGCATGTAACCATCGACTTTTCTTTAATTTCTGCCC
AGCTTTGAGAAAGGGAACAACCTATGAAGAGGAAATTAATAATATTAAACATATTACTTCAAAAATTAAT
GCAATTCTGGCTCATAATTCACCAGTTTTGATTGTTCAAAGATGGATACGTGGTTTCTTAGTTAGAAAAA
ATTTGAGCCCTGTGTTTTTCCACAAAAAAAAACAGCAGGAAAAAATTATTAGAGGATATGAAGCAAAATG
GATTTACATAACCAAAGGGTATGAAGATAAGCTCCTTAAGGATCTCTTTTTCAAACCTGAAACTAATATA
AAAGGAAAGCTTGCATATTGGAAACATAATATATATTATCCTGTTGATTTAAAAAATTCCAGTGAACACA
GAAAACATGTGTCATCTATTTTATGTGAATTAAAACCAAAAGATCTAGGCATGAAATCAAAAACATCAAG
ACATCTCATTCAAAAAGGTCAGGAGTCTGAAGATGAAATTGTGGATGAAAAATTGGATACCAGTTTTAGG
ATATCAGTTTTCAAACTACCCATATACACTTCAGGTTCATTGAAGAATAATGCAGTATTGAGAGAGAAAA
AACAACATTTTTTTCCTGCATATCCTCAGCCAATCTATACTACTCATCCAAAGCCAATCATTAAAAAAGA
CATACGATTGGAGCGGAGTATGAAAGAGTTTTTTGCACCACAAAGAGCTGGTATGAAACTCCGAACATTT
AGTGATATTGACAAATATTACACAGAACAAAAGAAGCAGGAATACCATAAAGAAAAAGTAAGAGTTGTAG
CCATGGCACAAGTTGCTCGAGAAAGAGTTAGAGTAGCTGTTAATGAACATTTGAATCAGAAAAAATATGC
TACACAAAAACTAATTGAAGAAAATAAAGAGACAATTCAGAACAGTTTACGACAAGTTTGGCAAAACAGA
TTCAACTACCTTGAAAAAGCTAGAGAGAGAAAAGCTCTGTTTCTAAAAGAAAAATCCCAAAAGGCTTCAG
AGCGTTTATTAGTTCAAAACTTAAATAATGAGCGCACTCTTTTGACCAGAGGACTACTTAAAATTGACAG
ACTGGAGAAGAATGAGGCTGTCCTAAAAGAGAAAAGCCTGATTGTTAAGCAAAAACTAAAAGCAGAAAAA
TATAGAAAGAATTTACTTAAAGAAATGAAAAAAGTTAGATCTCAAGAAATATATAAAAGACATTGTGAAG
AAAAATTTGTTATGGATATGATTGCCTTTGAAAAAGCCTGTGAAAGACTTCAAGATGCTAAAACAAAAGT
AGCAATTGTGAAAACAAATTTAGACTTTAAAGTTCCCAATGGACTGATAAAATGA

Translation (624 aa):
MFHGTVTEELTSHEEWSHYNENIREGQKDFVFVKFNGLHLKSMENLQSCISLRVCIFSNNFITDIHPLQS
CIKLIKLDLHGNQIKSLPNTKFWNGLKNLKLLYLHDNGFAKLKNICVLSACPTLIALTMFDCPVSLKKGY
RHVLVNSIWPLKALDHHVISDEEIIQNWHLPERFKACNHRLFFNFCPALRKGTTYEEEINNIKHITSKIN
AILAHNSPVLIVQRWIRGFLVRKNLSPVFFHKKKQQEKIIRGYEAKWIYITKGYEDKLLKDLFFKPETNI
KGKLAYWKHNIYYPVDLKNSSEHRKHVSSILCELKPKDLGMKSKTSRHLIQKGQESEDEIVDEKLDTSFR
ISVFKLPIYTSGSLKNNAVLREKKQHFFPAYPQPIYTTHPKPIIKKDIRLERSMKEFFAPQRAGMKLRTF
SDIDKYYTEQKKQEYHKEKVRVVAMAQVARERVRVAVNEHLNQKKYATQKLIEENKETIQNSLRQVWQNR
FNYLEKARERKALFLKEKSQKASERLLVQNLNNERTLLTRGLLKIDRLEKNEAVLKEKSLIVKQKLKAEK
YRKNLLKEMKKVRSQEIYKRHCEEKFVMDMIAFEKACERLQDAKTKVAIVKTNLDFKVPNGLIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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