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Report for CCDS2659.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2659.1 Public Homo sapiens 3 UBP1 24 110 108 CCDS HistoryNCBI Gene:7342Re-query CCDS DB by CCDS ID:2659.1Re-query CCDS DB by GeneID:7342See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2659.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000283628.9 ENSP00000283628.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000283628.9Link to Ensembl Protein Viewer:ENSP00000283628.5Re-query CCDS DB by Nucleotide ID:ENST00000283628Re-query CCDS DB by Protein ID:ENSP00000283628
Original member Current member EBI ENST00000283629.8 ENSP00000283629.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000283629.8Link to Ensembl Protein Viewer:ENSP00000283629.3Re-query CCDS DB by Nucleotide ID:ENST00000283629Re-query CCDS DB by Protein ID:ENSP00000283629
Original member Current member NCBI NM_001128161.2 NP_001121633.1 Accepted alive Link to Nucleotide Sequence:NM_001128161.2Link to Protein Sequence:NP_001121633.1Re-query CCDS DB by Nucleotide ID:NM_001128161Re-query CCDS DB by Protein ID:NP_001121633Link to BLAST:NP_001121633.1
Original member Current member NCBI NM_014517.5 NP_055332.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014517.5Link to Protein Sequence:NP_055332.3Re-query CCDS DB by Nucleotide ID:NM_014517Re-query CCDS DB by Protein ID:NP_055332Link to BLAST:NP_055332.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001121633.1 540 Q9NZI7-1 540 100% 0 0
NP_055332.3 540 Q9NZI7-1 540 100% 0 0

Chromosomal Locations for CCDS 2659.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 33390331 33390368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33392563 33392614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33393312 33393454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33396162 33396280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33397045 33397135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33400189 33400282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33400962 33401016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33402801 33402904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33408690 33408797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33409236 33409346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33409449 33409601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33411581 33411687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33412722 33412827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33416758 33416834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33425590 33425741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33439736 33439848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1623 nt):
ATGGCCTGGGTGCTCAAGATGGACGAGGTGATCGAGTCCGGGCTGGTGCACGACTTCGACGCCAGCCTCT
CGGGCATCGGGCAGGAACTGGGCGCCGGCGCTTACAGCATGAGTGATGTCTTGGCATTGCCCATTTTCAA
GCAGGAAGATTCCAGCCTTCCATTGGATGGTGAAACAGAGCACCCACCCTTTCAGTATGTGATGTGTGCT
GCAACGTCACCAGCAGTAAAACTGCATGATGAAACGCTTACTTATTTGAACCAAGGTCAGTCATATGAAA
TTCGGATGCTGGATAATCGGAAAATGGGTGATATGCCTGAGATCAATGGAAAATTAGTAAAGAGCATCAT
AAGGGTTGTATTCCATGACAGACGGCTACAATACACAGAGCATCAGCAACTTGAAGGATGGAAGTGGAAT
CGCCCAGGAGACAGACTTCTTGATTTAGATATTCCAATGTCTGTGGGAATAATTGACACAAGGACGAATC
CAAGCCAGTTAAATGCGGTTGAATTTCTGTGGGACCCAGCAAAACGCACCTCTGCTTTCATTCAGGTACA
CTGCATCAGCACAGAATTTACTCCACGGAAGCACGGAGGTGAAAAGGGAGTGCCCTTTAGGATCCAGGTT
GACACCTTTAAGCAGAATGAAAATGGAGAATACACAGATCATCTACACTCAGCTAGCTGCCAAATCAAAG
TTTTTAAGCCTAAAGGTGCAGACAGGAAACAAAAAACTGACCGAGAGAAGATGGAGAAGAGAACAGCTCA
TGAAAAAGAAAAGTATCAGCCGTCCTATGATACCACAATCCTCACAGAGATGAGGCTTGAGCCTATAATT
GAAGATGCAGTTGAACATGAGCAGAAAAAGTCCAGCAAGCGGACTTTGCCAGCAGACTACGGTGATTCTC
TGGCAAAGCGAGGCAGTTGTTCTCCGTGGCCCGATGCCCCCACAGCCTATGTGAATAACAGCCCTTCCCC
AGCGCCCACTTTCACCTCCCCACAGCAGAGCACTTGCAGTGTCCCAGACAGCAATTCTTCTTCCCCAAAT
CATCAGGGAGATGGAGCTTCACAGACCTCTGGTGAACAAATTCAGCCTTCAGCTACGATCCAGGAAACAC
AGCAATGGCTGCTCAAAAACAGATTCTCTTCCTACACAAGACTGTTCTCTAATTTTTCAGGTGCCGACTT
ATTAAAACTGACAAAGGAGGATTTAGTTCAAATTTGTGGTGCAGCCGATGGAATTCGGCTCTATAATTCA
CTGAAGTCAAGGTCGGTTAGACCCCGTTTAACCATCTATGTCTGCCGGGAGCAGCCAAGCAGCACAGTGC
TGCAAGGGCAGCAGCAAGCTGCAAGCAGTGCAAGCGAGAATGGCAGTGGGGCACCCTATGTTTATCATGC
AATCTACTTGGAAGAAATGATTGCCTCAGAAGTTGCTCGAAAACTTGCGCTGGTGTTTAATATCCCTCTC
CACCAAATTAATCAGGTTTACAGACAGGGTCCCACCGGTATTCACATTCTTGTTAGTGATCAGATGGTTC
AGAATTTTCAAGATGAGAGTTGTTTTTTATTCTCCACAGTAAAAGCTGAAAGTAGTGATGGCATCCACAT
AATTTTGAAGTGA

Translation (540 aa):
MAWVLKMDEVIESGLVHDFDASLSGIGQELGAGAYSMSDVLALPIFKQEDSSLPLDGETEHPPFQYVMCA
ATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMGDMPEINGKLVKSIIRVVFHDRRLQYTEHQQLEGWKWN
RPGDRLLDLDIPMSVGIIDTRTNPSQLNAVEFLWDPAKRTSAFIQVHCISTEFTPRKHGGEKGVPFRIQV
DTFKQNENGEYTDHLHSASCQIKVFKPKGADRKQKTDREKMEKRTAHEKEKYQPSYDTTILTEMRLEPII
EDAVEHEQKKSSKRTLPADYGDSLAKRGSCSPWPDAPTAYVNNSPSPAPTFTSPQQSTCSVPDSNSSSPN
HQGDGASQTSGEQIQPSATIQETQQWLLKNRFSSYTRLFSNFSGADLLKLTKEDLVQICGAADGIRLYNS
LKSRSVRPRLTIYVCREQPSSTVLQGQQQAASSASENGSGAPYVYHAIYLEEMIASEVARKLALVFNIPL
HQINQVYRQGPTGIHILVSDQMVQNFQDESCFLFSTVKAESSDGIHIILK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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