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Report for CCDS5265.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5265.1 Public Homo sapiens 6 SOD2 24 110 108 CCDS HistoryNCBI Gene:6648Re-query CCDS DB by CCDS ID:5265.1Re-query CCDS DB by GeneID:6648See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5265.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367055.8 ENSP00000356022.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367055.8Link to Ensembl Protein Viewer:ENSP00000356022.4Re-query CCDS DB by Nucleotide ID:ENST00000367055Re-query CCDS DB by Protein ID:ENSP00000356022
Original member Current member EBI ENST00000538183.7 ENSP00000446252.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000538183.7Link to Ensembl Protein Viewer:ENSP00000446252.1Re-query CCDS DB by Nucleotide ID:ENST00000538183Re-query CCDS DB by Protein ID:ENSP00000446252
Original member Current member NCBI NM_000636.4 NP_000627.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000636.4Link to Protein Sequence:NP_000627.2Re-query CCDS DB by Nucleotide ID:NM_000636Re-query CCDS DB by Protein ID:NP_000627Link to BLAST:NP_000627.2
Original member Current member NCBI NM_001024465.3 NP_001019636.1 Accepted alive Link to Nucleotide Sequence:NM_001024465.3Link to Protein Sequence:NP_001019636.1Re-query CCDS DB by Nucleotide ID:NM_001024465Re-query CCDS DB by Protein ID:NP_001019636Link to BLAST:NP_001019636.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000627.2 222 P04179-1 222 100% 0 0
NP_001019636.1 222 P04179-1 222 100% 0 0

Chromosomal Locations for CCDS 5265.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 159682493 159682638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159684854 159685033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159688126 159688242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159692661 159692863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159693145 159693167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (669 nt):
ATGTTGAGCCGGGCAGTGTGCGGCACCAGCAGGCAGCTGGCTCCGGTTTTGGGGTATCTGGGCTCCAGGC
AGAAGCACAGCCTCCCCGACCTGCCCTACGACTACGGCGCCCTGGAACCTCACATCAACGCGCAGATCAT
GCAGCTGCACCACAGCAAGCACCACGCGGCCTACGTGAACAACCTGAACGTCACCGAGGAGAAGTACCAG
GAGGCGTTGGCCAAGGGAGATGTTACAGCCCAGATAGCTCTTCAGCCTGCACTGAAGTTCAATGGTGGTG
GTCATATCAATCATAGCATTTTCTGGACAAACCTCAGCCCTAACGGTGGTGGAGAACCCAAAGGGGAGTT
GCTGGAAGCCATCAAACGTGACTTTGGTTCCTTTGACAAGTTTAAGGAGAAGCTGACGGCTGCATCTGTT
GGTGTCCAAGGCTCAGGTTGGGGTTGGCTTGGTTTCAATAAGGAACGGGGACACTTACAAATTGCTGCTT
GTCCAAATCAGGATCCACTGCAAGGAACAACAGGCCTTATTCCACTGCTGGGGATTGATGTGTGGGAGCA
CGCTTACTACCTTCAGTATAAAAATGTCAGGCCTGATTATCTAAAAGCTATTTGGAATGTAATCAACTGG
GAGAATGTAACTGAAAGATACATGGCTTGCAAAAAGTAA

Translation (222 aa):
MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQ
EALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASV
GVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINW
ENVTERYMACKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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