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Report for CCDS1075.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1075.1 Public Homo sapiens 1 PYGO2 24 110 108 CCDS HistoryNCBI Gene:90780Re-query CCDS DB by CCDS ID:1075.1Re-query CCDS DB by GeneID:90780See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1075.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368457.3 ENSP00000357442.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368457.3Link to Ensembl Protein Viewer:ENSP00000357442.2Re-query CCDS DB by Nucleotide ID:ENST00000368457Re-query CCDS DB by Protein ID:ENSP00000357442
Original member Current member NCBI NM_138300.4 NP_612157.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138300.4Link to Protein Sequence:NP_612157.1Re-query CCDS DB by Nucleotide ID:NM_138300Re-query CCDS DB by Protein ID:NP_612157Link to BLAST:NP_612157.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612157.1 406 Q9BRQ0 406 100% 0 0

Chromosomal Locations for CCDS 1075.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 154958779 154959846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154960977 154961026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154961474 154961576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGGCCGCCTCGGCGCCGCCCCCACCGGACAAGCTGGAGGGAGGTGGCGGCCCCGCACCGCCCCCTGCGC
CGCCCAGCACCGGGAGGAAGCAGGGCAAGGCCGGTCTGCAAATGAAGAGTCCAGAAAAGAAGCGAAGGAA
GTCAAATACTCAGGGCCCTGCATACTCACATCTGACGGAGTTTGCACCACCCCCAACTCCCATGGTGGAT
CACCTGGTTGCATCCAACCCTTTTGAAGATGACTTCGGAGCCCCCAAAGTGGGGGTTGCAGCCCCTCCAT
TCCTTGGCAGTCCTGTGCCCTTCGGAGGCTTCCGTGTGCAGGGGGGCATGGCGGGCCAGGTACCCCCAGG
CTACAGCACTGGAGGTGGAGGGGGCCCCCAGCCACTCCGTCGACAGCCACCCCCCTTCCCTCCCAATCCT
ATGGGCCCTGCTTTCAACATGCCCCCCCAGGGTCCTGGCTACCCACCCCCAGGCAACATGAACTTTCCCA
GCCAACCCTTCAACCAGCCTCTGGGTCAAAACTTTAGTCCTCCCAGTGGGCAGATGATGCCGGGCCCAGT
GGGGGGATTTGGTCCCATGATCTCACCCACCATGGGACAGCCTCCCAGAGCAGAGCTGGGCCCACCTTCT
CTGTCCCAACGATTTGCTCAGCCAGGGGCTCCTTTTGGCCCTTCTCCTCTCCAGAGACCTGGTCAGGGGC
TCCCCAGCCTGCCGCCTAACACAAGTCCCTTTCCTGGTCCGGACCCTGGCTTTCCTGGCCCTGGTGGTGA
GGATGGGGGGAAGCCCTTGAATCCACCTGCTTCTACTGCTTTTCCCCAGGAGCCCCACTCAGGCTCCCCG
GCTGCTGCTGTTAATGGGAACCAGCCCAGTTTCCCCCCGAACAGCAGTGGGCGGGGTGGGGGCACTCCAG
ATGCCAACAGCTTGGCACCCCCTGGCAAGGCAGGTGGGGGCTCCGGGCCCCAGCCTCCCCCAGGCTTGGT
GTACCCATGTGGTGCCTGTCGGAGTGAGGTGAACGATGACCAGGATGCCATTCTGTGTGAGGCCTCCTGC
CAGAAATGGTTCCACCGTGAGTGCACAGGCATGACTGAGAGCGCCTATGGGCTGCTGACCACTGAAGCTT
CTGCCGTCTGGGCCTGCGATCTCTGCCTCAAGACCAAGGAGATCCAGTCTGTCTACATCCGTGAGGGCAT
GGGGCAGCTGGTGGCTGCTAACGATGGGTGA

Translation (406 aa):
MAASAPPPPDKLEGGGGPAPPPAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPAYSHLTEFAPPPTPMVD
HLVASNPFEDDFGAPKVGVAAPPFLGSPVPFGGFRVQGGMAGQVPPGYSTGGGGGPQPLRRQPPPFPPNP
MGPAFNMPPQGPGYPPPGNMNFPSQPFNQPLGQNFSPPSGQMMPGPVGGFGPMISPTMGQPPRAELGPPS
LSQRFAQPGAPFGPSPLQRPGQGLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSP
AAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGKAGGGSGPQPPPGLVYPCGACRSEVNDDQDAILCEASC
QKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEIQSVYIREGMGQLVAANDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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