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Report for CCDS3475.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3475.1 Public Homo sapiens 4 COMMD8 24 110 108 CCDS HistoryNCBI Gene:54951Re-query CCDS DB by CCDS ID:3475.1Re-query CCDS DB by GeneID:54951See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3475.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381571.6 ENSP00000370984.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381571.6Link to Ensembl Protein Viewer:ENSP00000370984.4Re-query CCDS DB by Nucleotide ID:ENST00000381571Re-query CCDS DB by Protein ID:ENSP00000370984
Original member Current member NCBI NM_017845.5 NP_060315.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017845.5Link to Protein Sequence:NP_060315.1Re-query CCDS DB by Nucleotide ID:NM_017845Re-query CCDS DB by Protein ID:NP_060315Link to BLAST:NP_060315.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060315.1 183 Q9NX08 183 100% 0 0

Chromosomal Locations for CCDS 3475.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 47451645 47451665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47453059 47453214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47456577 47456729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47460144 47460299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47463586 47463651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (552 nt):
ATGGAGCCGGAAGAGGGGACGCCCTTGTGGCGGCTGCAGAAGCTGCCGGCCGAGCTGGGCCCGCAGCTTC
TTCACAAAATAATTGATGGCATTTGTGGTCGAGCTTATCCTGTGTACCAAGATTATCACACTGTTTGGGA
ATCAGAAGAATGGATGCACGTTTTAGAAGATATTGCCAAATTTTTCAAAGCCATAGTTGGTAAAAACTTA
CCTGATGAAGAGATATTTCAGCAGTTGAATCAGTTGAATTCACTTCATCAAGAAACTATCATGAAATGCG
TGAAAAGTAGGAAAGATGAAATCAAACAGGCTCTGTCAAGAGAAATAGTTGCTATTTCCTCTGCACAGCT
ACAGGATTTTGATTGGCAGGTAAAGCTTGCACTTTCCAGTGACAAGATTGCTGCATTACGAATGCCACTT
TTAAGCCTGCATCTAGATGTAAAAGAAAATGGTGAAGTAAAACCTTATTCTATTGAAATGAGTAGAGAGG
AGCTGCAGAATCTAATACAGTCCTTGGAAGCAGCGAATAAGGTGGTCCTGCAGTTGAAATAA

Translation (183 aa):
MEPEEGTPLWRLQKLPAELGPQLLHKIIDGICGRAYPVYQDYHTVWESEEWMHVLEDIAKFFKAIVGKNL
PDEEIFQQLNQLNSLHQETIMKCVKSRKDEIKQALSREIVAISSAQLQDFDWQVKLALSSDKIAALRMPL
LSLHLDVKENGEVKPYSIEMSREELQNLIQSLEAANKVVLQLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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