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Report for CCDS10110.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10110.1 Public Homo sapiens 15 CTDSPL2 24 110 108 CCDS HistoryNCBI Gene:51496Re-query CCDS DB by CCDS ID:10110.1Re-query CCDS DB by GeneID:51496See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10110.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000260327.9 ENSP00000260327.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000260327.9Link to Ensembl Protein Viewer:ENSP00000260327.4Re-query CCDS DB by Nucleotide ID:ENST00000260327Re-query CCDS DB by Protein ID:ENSP00000260327
Original member Current member EBI ENST00000558966.5 ENSP00000452837.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000558966.5Link to Ensembl Protein Viewer:ENSP00000452837.1Re-query CCDS DB by Nucleotide ID:ENST00000558966Re-query CCDS DB by Protein ID:ENSP00000452837
Original member Current member NCBI NM_016396.3 NP_057480.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016396.3Link to Protein Sequence:NP_057480.2Re-query CCDS DB by Nucleotide ID:NM_016396Re-query CCDS DB by Protein ID:NP_057480Link to BLAST:NP_057480.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057480.2 466 Q05D32-1 466 100% 0 0

Chromosomal Locations for CCDS 10110.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 44459015 44459200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44484224 44484362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44486551 44486700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44490784 44490999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44496380 44496458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44497027 44497138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44499727 44499813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44514598 44514660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44514765 44514844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44519169 44519295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44521311 44521406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44524109 44524174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1401 nt):
ATGAGGCTGAGAACACGGAAAGCTTCTCAGCAGTCAAATCAAATCCAAACACAACGCACTGCCAGAGCAA
AGAGGAAATATTCAGAGGTTGATGATAGCCTGCCTTCAGGAGGAGAAAAACCATCGAAGAATGAAACCGG
CTTGTTGTCTTCAATTAAAAAATTTATTAAAGGAAGCACACCTAAGGAAGAGAGAGAAAATCCTTCAAAA
CGGAGTAGAATTGAACGTGATATAGATAACAATTTGATCACGTCAACACCAAGAGCAGGAGAAAAACCTA
ACAAACAGATATCTCGAGTAAGACGGAAAAGTCAAGTAAATGGAGAAGCTGGTAGTTATGAAATGACAAA
TCAACATGTAAAACAAAATGGAAAATTAGAAGATAATCCTTCCTCTGGCAGTCCTCCAAGGACTACTTTG
TTGGGGACCATATTTTCACCTGTCTTCAACTTTTTTTCACCAGCAAATAAAAATGGAACGTCAGGATCAG
ATTCTCCAGGACAGGCTGTGGAAGCTGAAGAAATAGTAAAACAACTTGATATGGAACAGGTGGATGAGAT
CACTACCAGTACTACTACATCAACTAATGGAGCAGCTTACTCAAATCAAGCAGTTCAAGTGAGACCATCA
CTAAACAATGGTTTAGAAGAAGCAGAAGAAACAGTTAATCGTGATATCCCACCCCTTACAGCACCAGTAA
CTCCAGATAGTGGTTATTCATCAGCCCACGCGGAGGCCACCTATGAAGAAGACTGGGAAGTATTTGACCC
CTATTATTTCATCAAACATGTCCCGCCACTGACAGAAGAACAACTAAATAGGAAACCTGCTCTTCCGTTG
AAAACAAGAAGCACACCGGAATTCTCCCTAGTTTTAGACTTGGATGAAACACTAGTGCATTGTAGTCTAA
ATGAGCTAGAAGATGCAGCACTTACTTTTCCAGTCCTTTTCCAAGATGTCATTTATCAGGTTTATGTGAG
ATTAAGACCATTTTTCAGGGAATTCCTGGAACGAATGTCTCAGATGTATGAGATCATTCTTTTTACTGCT
TCTAAGAAGGTGTATGCAGACAAGTTACTGAACATACTAGACCCTAAAAAGCAACTGGTCAGGCACCGGC
TTTTCCGTGAACATTGTGTTTGTGTACAAGGAAACTATATAAAGGACTTAAATATTCTTGGAAGAGATCT
TTCAAAAACTATAATAATTGACAACTCACCACAAGCCTTTGCATATCAGCTTTCTAATGGAATCCCTATA
GAAAGTTGGTTTATGGATAAAAATGACAATGAACTCCTAAAATTGATTCCATTCCTGGAGAAGCTTGTAG
AACTGAATGAAGATGTTCGACCACACATCAGAGACAGATTTCGCTTGCATGATTTGCTGCCCCCAGATTA
A

Translation (466 aa):
MRLRTRKASQQSNQIQTQRTARAKRKYSEVDDSLPSGGEKPSKNETGLLSSIKKFIKGSTPKEERENPSK
RSRIERDIDNNLITSTPRAGEKPNKQISRVRRKSQVNGEAGSYEMTNQHVKQNGKLEDNPSSGSPPRTTL
LGTIFSPVFNFFSPANKNGTSGSDSPGQAVEAEEIVKQLDMEQVDEITTSTTTSTNGAAYSNQAVQVRPS
LNNGLEEAEETVNRDIPPLTAPVTPDSGYSSAHAEATYEEDWEVFDPYYFIKHVPPLTEEQLNRKPALPL
KTRSTPEFSLVLDLDETLVHCSLNELEDAALTFPVLFQDVIYQVYVRLRPFFREFLERMSQMYEIILFTA
SKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGNYIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPI
ESWFMDKNDNELLKLIPFLEKLVELNEDVRPHIRDRFRLHDLLPPD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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