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Report for CCDS10551.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10551.1 Public Homo sapiens 16 RSL1D1 24 110 108 CCDS HistoryNCBI Gene:26156Re-query CCDS DB by CCDS ID:10551.1Re-query CCDS DB by GeneID:26156See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10551.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000571133.6 ENSP00000460871.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000571133.6Link to Ensembl Protein Viewer:ENSP00000460871.1Re-query CCDS DB by Nucleotide ID:ENST00000571133Re-query CCDS DB by Protein ID:ENSP00000460871
Original member Current member NCBI NM_015659.3 NP_056474.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015659.3Link to Protein Sequence:NP_056474.2Re-query CCDS DB by Nucleotide ID:NM_015659Re-query CCDS DB by Protein ID:NP_056474Link to BLAST:NP_056474.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056474.2 490 O76021-1 490 100% 0 0

Chromosomal Locations for CCDS 10551.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 11837787 11838113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11839695 11839985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11841695 11841820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11841907 11842000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11846501 11846602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11846695 11846843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11847668 11847806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11850279 11850418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11851408 11851512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGGAGGATTCGGCCTCGGCCTCGCTGTCTTCTGCAGCCGCTACTGGAACCTCCACCTCGACTCCAGCGG
CCCCGACAGCACGGAAGCAGCTGGATAAAGAACAGGTTAGAAAGGCAGTGGACGCTCTCTTGACGCATTG
CAAGTCCAGGAAAAACAATTATGGGTTGCTTTTGAATGAGAATGAAAGTTTATTTTTAATGGTGGTATTA
TGGAAAATTCCAAGTAAAGAACTGAGGGTCAGATTGACCTTGCCTCATAGTATTCGATCAGATTCAGAAG
ATATCTGTTTATTTACGAAGGATGAACCCAATTCAACTCCTGAAAAGACAGAACAGTTTTATAGAAAGCT
TTTAAACAAGCATGGAATTAAAACCGTTTCTCAGATTATCTCCCTCCAAACTCTAAAGAAGGAATATAAA
TCCTATGAAGCCAAGCTCCGCCTTCTGAGCAGTTTTGATTTCTTCCTTACTGATGCCAGAATTAGGCGGC
TCTTACCCTCACTCATTGGGAGACATTTCTATCAAAGAAAGAAAGTTCCAGTATCTGTAAACCTTCTGTC
CAAGAATTTATCAAGAGAGATCAATGACTGTATAGGTGGAACAGTCTTAAACATTTCTAAAAGTGGTTCT
TGCAGTGCTATACGTATTGGTCACGTTGGAATGCAAATTGAGCACATCATTGAAAACATTGTTGCTGTCA
CCAAAGGACTTTCAGAAAAATTGCCAGAGAAGTGGGAGAGCGTGAAACTCCTGTTTGTGAAAACTGAGAA
ATCGGCTGCACTTCCCATCTTTTCCTCGTTTGTCAGCAATTGGGATGAAGCCACCAAAAGATCTTTGCTT
AATAAGAAGAAAAAAGAGGCAAGGAGAAAACGAAGAGAAAGAAATTTTGAAAAACAAAAGGAGAGGAAGA
AGAAGAGGCAGCAGGCTAGGAAGACTGCATCAGTTCTTAGTAAAGATGATGTGGCACCTGAAAGTGGTGA
TACTACAGTGAAGAAACCTGAATCAAAGAAGGAACAGACCCCAGAGCATGGGAAGAAAAAACGTGGCAGA
GGAAAAGCCCAAGTTAAAGCAACAAATGAATCCGAAGACGAAATCCCACAGCTGGTACCAATAGGAAAGA
AGACTCCAGCTAATGAAAAAGTAGAGATTCAAAAACATGCCACAGGAAAGAAGTCTCCAGCAAAGAGTCC
TAATCCCAGCACACCTCGTGGGAAGAAAAGAAAGGCTTTGCCAGCATCTGAGACCCCAAAAGCTGCAGAG
TCTGAGACCCCAGGGAAAAGCCCAGAGAAGAAGCCAAAAATCAAAGAAGAGGCAGTGAAGGAAAAAAGTC
CTTCGCTGGGGAAAAAAGATGCGAGACAGACTCCAAAAAAGCCAGAGGCCAAGTTTTTCACCACTCCTAG
TAAATCTGTGAGAAAAGCTTCCCACACCCCCAAAAAATGGCCCAAAAAACCCAAAGTACCCCAGTCGACC
TAA

Translation (490 aa):
MEDSASASLSSAAATGTSTSTPAAPTARKQLDKEQVRKAVDALLTHCKSRKNNYGLLLNENESLFLMVVL
WKIPSKELRVRLTLPHSIRSDSEDICLFTKDEPNSTPEKTEQFYRKLLNKHGIKTVSQIISLQTLKKEYK
SYEAKLRLLSSFDFFLTDARIRRLLPSLIGRHFYQRKKVPVSVNLLSKNLSREINDCIGGTVLNISKSGS
CSAIRIGHVGMQIEHIIENIVAVTKGLSEKLPEKWESVKLLFVKTEKSAALPIFSSFVSNWDEATKRSLL
NKKKKEARRKRRERNFEKQKERKKKRQQARKTASVLSKDDVAPESGDTTVKKPESKKEQTPEHGKKKRGR
GKAQVKATNESEDEIPQLVPIGKKTPANEKVEIQKHATGKKSPAKSPNPSTPRGKKRKALPASETPKAAE
SETPGKSPEKKPKIKEEAVKEKSPSLGKKDARQTPKKPEAKFFTTPSKSVRKASHTPKKWPKKPKVPQST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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