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Report for CCDS13251.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13251.1 Public Homo sapiens 20 FAM83C 24 110 108 CCDS HistoryNCBI Gene:128876Re-query CCDS DB by CCDS ID:13251.1Re-query CCDS DB by GeneID:128876See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13251.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374408.4 ENSP00000363529.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374408.4Link to Ensembl Protein Viewer:ENSP00000363529.3Re-query CCDS DB by Nucleotide ID:ENST00000374408Re-query CCDS DB by Protein ID:ENSP00000363529
Original member Current member NCBI NM_178468.6 NP_848563.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178468.6Link to Protein Sequence:NP_848563.1Re-query CCDS DB by Nucleotide ID:NM_178468Re-query CCDS DB by Protein ID:NP_848563Link to BLAST:NP_848563.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848563.1 747 Q9BQN1 747 100% 0 0

Chromosomal Locations for CCDS 13251.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 35286535 35287972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35288461 35288585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35288791 35288958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35291792 35292304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2244 nt):
ATGTTCGGAGGCCCGGGGCCTGGGGTCCTGGGAGCCCAGGGCATGGCGGGACCCCTGCGGGGCCGGGTGG
AAGAGCTGAAGCTGCCGTGGTGGCGGGAGAGCTCACCGCTGGTGCTGCGGCACAGCGAGGCGGCTCGGCT
GGCGGCCGACGCCCTCCTGGAGCGGGGTGAGGCTGCCTACCTGCGGGTCATCTCCGAGGAGCGGGAGCTG
CCCTTCCTGAGCGCCCTGGATGTGGACTACATGACCAGCCATGTGCGCGGGGGCCCTGAGCTCAGCGAGG
CTCAGGGGCAGGAGGCCTCCGGGCCAGACCGCCTCAGCCTGCTCTCTGAAGTCACCTCAGGGACTTACTT
CCCCATGGCCTCTGACATAGACCCCCCAGACCTGGACCTGGGCTGGCCCGAGGTGCCACAGGCCACAGGC
TTCAGCCCCACCCAGGCTGTGGTCCACTTCCAGAGGGACAAGGCCAAGAACATCAAGGACCTGCTGCGCT
TCCTTTTCAGCCAGGCCCACACGGTGGTGGCTGTGGTGATGGACATATTCACTGACATGGAGCTTCTGTG
TGACCTCATGGAGGCCTCAAGCCGGCGTGGTGTCCCTGTGTACCTGCTCCTTGCCCAGGAGCACCTGAGG
CACTTCCTGGAGATGTGCTACAAGATGGACCTCAATGGGGAGCACCTGCCGAACATGCGTGTGCGGAGCA
CGTGTGGGGACACATACTGCAGCAAGGCTGGCCGCCGCTTCACGGGGCAGGCCCTGGAGAAGTTCGTCCT
CATTGACTGTGAGCAAGTGGTGGCGGGCAGTTACAGCTTCACCTGGCTTTGCAGCCAGGCCCACACTAGC
ATGGTGCTGCAGCTGAGGGGCCGCATCGTGGAAGACTTTGACCGGGAGTTCCGCTGTCTGTACGCTGAGT
CGCAGCCTGTGGAGGGCTTCTGTGGCGGTGAGGACCCGCTGTCTCCCCGGGCACTGCGTCCTCCCCCTGT
GGCCCTAGCCTTCAGGCCTGATGTCCCAAGCCCCACGTCGTCCCTGCCCTCCAGCACCAGCCTCAGCAGC
ATCAAGCAGTCACCGCTTATGGGTCGCTCCTCCTACCTCGCTCTACCAGGAGGTGGTGATTGCAGTGATA
CGGGTGTGGTGTCCTCGTCCCTGGGTCCTGCCCGCCGTGAGGCCAGTGGCCAGCCCTCCCTACATCGCCA
ACTGTCAGACCCTAACCACGGCTCCCCTCCTGGGCTCTATAGGGCCAATCTCGGCAAGCTAGGGGCATAC
CCATGGTCCCAGTCCTCCCCTGCCCTCAACCATAATAGTACCAGCCCCTTAACCTTGGCAGTGGGGTCAC
CTCTGCTTCCTCGCTCCCGGCCCCTCCTCCAGTTCCATCGGGGTGCCCCAGCTCTGTCCCGGTTCCCAGA
GAATGGGCTCCCAGGAAGCCAAGAGCCCAGCCCCCTGCGGGGTCGATGGGTACCTGGCACAACCCTGGAG
ACAGTGGAGGAGAAGGAGAAGAAGGCATCTCCAAGTCAGAGCCGTGGCCAGCTGGATCTCCTTGTCCCCT
TCCCCAGAGCCCGAGAAGTGGGAGACCCTGACTCTGGGGTTACCCCCAACTCAGGCCCCCTTCGGCCTGG
CGAGCAGGCCCCAGAGGACAGGAGGTTGTCCCCAAGCCAGGCCGACAGCCAGCTGGATCTCCTGTCCCGA
GCCCTGGGTACTGGGGGTGCCCCTGAGTTGGGTTCCCTCAGACCTGGTGATCGGGCCCTGGAGGACAGGA
GGCTGTCCCTAAACCAAAGCCGTGGCCAATCAGACCTCCTGATGCAGTACCCCAAGGCCCAGGGTTCCAG
AGTGCCCCTTGAAACCAACTCCTCAGCCAGACCTGCCAGACGGGCACCAGATGAGCGGCGGCAGACCCTG
GGGCACAGCCAGCTGGACCTCATCACAAAGTTCGGCCCATTCCGTGGTGAGGGGCCTGGGCCCAATGGTC
TCCCGATATCAAGCCCTGCTCGCACGGCTGGAGCTGGGTCTGGGGATGAGAAACGGCTAACCCTGGGCCA
CAGCAAGCTGGACCTCATCACCAAGTATCATCAGTTGCACGGGGCCAGGCAGGGAACTGAGCCTGGGGGT
CCCAAGGGTGGCCATCTCAATGGTGGTAACAGTGACCTGGTCAGGGATGAGAAACGGCTGACCCTGGGTC
ACAGCAAACTGGACCTCATCACTAAGTACAACAAGTCCAAGTTCAAGCAGCTCCGAAGCCGCTTTGAGTC
CTAG

Translation (747 aa):
MFGGPGPGVLGAQGMAGPLRGRVEELKLPWWRESSPLVLRHSEAARLAADALLERGEAAYLRVISEEREL
PFLSALDVDYMTSHVRGGPELSEAQGQEASGPDRLSLLSEVTSGTYFPMASDIDPPDLDLGWPEVPQATG
FSPTQAVVHFQRDKAKNIKDLLRFLFSQAHTVVAVVMDIFTDMELLCDLMEASSRRGVPVYLLLAQEHLR
HFLEMCYKMDLNGEHLPNMRVRSTCGDTYCSKAGRRFTGQALEKFVLIDCEQVVAGSYSFTWLCSQAHTS
MVLQLRGRIVEDFDREFRCLYAESQPVEGFCGGEDPLSPRALRPPPVALAFRPDVPSPTSSLPSSTSLSS
IKQSPLMGRSSYLALPGGGDCSDTGVVSSSLGPARREASGQPSLHRQLSDPNHGSPPGLYRANLGKLGAY
PWSQSSPALNHNSTSPLTLAVGSPLLPRSRPLLQFHRGAPALSRFPENGLPGSQEPSPLRGRWVPGTTLE
TVEEKEKKASPSQSRGQLDLLVPFPRAREVGDPDSGVTPNSGPLRPGEQAPEDRRLSPSQADSQLDLLSR
ALGTGGAPELGSLRPGDRALEDRRLSLNQSRGQSDLLMQYPKAQGSRVPLETNSSARPARRAPDERRQTL
GHSQLDLITKFGPFRGEGPGPNGLPISSPARTAGAGSGDEKRLTLGHSKLDLITKYHQLHGARQGTEPGG
PKGGHLNGGNSDLVRDEKRLTLGHSKLDLITKYNKSKFKQLRSRFES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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