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Report for CCDS4047.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4047.3 Public Homo sapiens 5 JMY 24 110 108 CCDS HistoryNCBI Gene:133746Re-query CCDS DB by CCDS ID:4047.3Re-query CCDS DB by GeneID:133746See the combined annotation on chromosome 5 in Sequence Viewer

Public Note for CCDS 4047.2
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 4047.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396137.5 ENSP00000379441.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396137.5Link to Ensembl Protein Viewer:ENSP00000379441.4Re-query CCDS DB by Nucleotide ID:ENST00000396137Re-query CCDS DB by Protein ID:ENSP00000379441
Original member Current member NCBI NM_152405.5 NP_689618.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152405.5Link to Protein Sequence:NP_689618.4Re-query CCDS DB by Nucleotide ID:NM_152405Re-query CCDS DB by Protein ID:NP_689618Link to BLAST:NP_689618.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689618.4 988 Q8N9B5-1 988 100% 0 0

Chromosomal Locations for CCDS 4047.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 79236651 79237682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 79277910 79278083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 79290121 79290271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 79291130 79291299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 79300153 79300318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 79300676 79300863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 79306375 79306461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 79312403 79312498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 79314257 79314851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 79316000 79316307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2967 nt):
ATGTCGTTCGCGCTGGAGGAGACGCTCGAGTCGGACTGGGTGGCTGTGCGGCCCCATGTGTTCGACGAGC
GCGAGAAACACAAATTCGTCTTTATTGTGGCCTGGAACGAGATTGAGGGCAAGTTTGCCATAACCTGCCA
CAACCGGACGGCCCAGAGGCAGAGGAGCGGCTCCCGGGAGCAAGCGGGGGCGCGAGGGGGCGCCGAGGCC
GGCGGAGCTGCGTCCGACGGGAGCCGCGGGCCCGGCAGCCCGGCGGGCAGGGGTCGGCCCGAGGCCACTG
CCTCTGCAACTCTGGTTAGGAGCCCCGGGCCCCGGCGGAGCTCGGCCTGGGCGGAGGGCGGCTCTCCTCG
GAGCACTCGCAGCCTTCTGGGGGACCCGCGGCTGCGGAGTCCTGGCAGCAAAGGGGCGGAGAGTCGTCTT
AGGAGCCCAGTGCGGGCCAAACCCATCCCGGGTCAGAAAACATCTGAAGCCGACGATGCGGCGGGGGCAG
CCGCTGCAGCAGCCCGGCCGGCGCCCAGAGAGGCCCAGGTGTCCTCTGTACGGATAGTGAGCGCCTCTGG
GACGGTCTCCGAGGAGATAGAGGTGCTGGAAATGGTGAAGGAGGACGAGGCACCTCTGGCGCTCTCGGAC
GCGGAGCAGCCGCCGCCCGCCACCGAGCTGGAGTCTCCGGCCGAAGAGTGCAGCTGGGCCGGACTGTTTT
CTTTCCAGGACCTGCGCGCCGTGCACCAGCAGCTGTGCTCGGTGAACTCGCAGTTGGAGCCGTGCCTGCC
GGTGTTCCCCGAGGAACCTTCGGGCATGTGGACTGTGCTGTTTGGGGGCGCCCCCGAGATGACCGAGCAG
GAAATCGACACTCTGTGTTACCAGCTCCAGGTCTACCTGGGCCACGGCCTGGACACCTGCGGCTGGAAGA
TCCTCTCCCAGGTGCTCTTCACCGAGACCGATGATCCCGAGGAGTATTACGAAAGCCTCAGCGAGCTGCG
GCAGAAGGGCTACGAAGAAGTGCTTCAGCGGGCCAGGAAGCGCATCCAGGAGCTCTTGGATAAGCACAAG
AATACAGAGAGCATGGTGGAGCTTCTGGACTTGTATCAGATGGAGGATGAAGCCTACAGCAGCCTTGCAG
AAGCTACAACCGAACTCTATCAGTATTTACTACAGCCATTCCGAGACATGAGAGAACTTGCCATGCTACG
AAGACAGCAGATCAAGATTTCCATGGAGAATGATTATCTGGGACCTCGAAGAATTGAGAGTCTACAAAAA
GAAGATGCTGATTGGCAGCGGAAAGCTCACATGGCTGTACTGTCTATTCAAGATCTTACTGTCAAGTACT
TTGAAATAACAGCTAAAGCTCAAAAAGCTGTGTATGATCGAATGCGAGCTGATCAGAAGAAATTTGGTAA
AGCATCATGGGCAGCGGCTGCTGAACGGATGGAAAAACTCCAGTATGCAGTTTCTAAGGAAACTTTGCAG
ATGATGAGAGCTAAAGAGATATGCTTGGAACAGCGGAAACATGCACTAAAGGAAGAGATGCAGAGTTTGC
GGGGTGGTACAGAAGCGATAGCACGATTGGATCAGTTAGAAGCTGATTATTATGATCTGCAACTTCAGTT
GTATGAAGTACAGTTTGAAATCTTGAAGTGTGAAGAGTTACTATTGACAGCGCAACTAGAAAGCATCAAA
AGACTTATATCAGAAAAAAGAGATGAAGTGGTATACTATGACACTTACGAAAGCATGGAGGCCATGCTGG
AGAAGGAAGAGATGGCAGCATCTGCGTACTTACAGAGAGAAGAGCTGCAGAAACTTCAGCAGAAAGCACG
CCAGCTGGAAGCAAGACGTGGACGGGTTTCTGCCAAGAAATCCTACCTCAGAAATAAAAAGGAAATATGT
ATTGCAAAACACAATGAAAAAATCCAACAGCGCACTCGGATTGAAGATGAATATAGAACCCATCACACAG
TACAACTAAAGAGAGAAAAATTACATGATGAAGAAGAAAGAAAAAGTGCCTGGGTTAGCCAAGAGAGACA
GAGAACACTGGATAGACTTCGAACATTTAAACAGAGGTATCCTGGGCAAGTCATACTTAAATCAACCAGA
TTACGACTAGCTCATGCAAGAAGAAAAGGTGCAGCAAGTCCTGTTCTCCAAGAGGATCATTGTGACTCTT
TACCAAGTGTGTTACAGGTAGAAGAGAAAACTGAAGAGGTGGGAGAAGGAAGAGTCAAGCGTGGGCCATC
ACAGACAACAGAACCCCAGAGCCTTGTGCAACTTGAAGATACTTCATTAACACAACTTGAAGCCACCTCA
TTACCTCTCAGTGGTGTTACCTCTGAACTGCCTCCCACTATATCTCTTCCACTTTTGAATAACAACCTCG
AACCATGTTCTGTTACCATAAATCCACTCCCATCCCCTCTTCCTCCAACACCACCACCTCCCCCACCTCC
TCCCCCTCCCCCACCACCACCACCTCTGCCTGTTGCTAAGGACAGTGGCCCAGAGACACTGGAGAAAGAT
CTGCCTAGAAAGGAGGGGAATGAGAAGAGGATCCCAAAGTCAGCCAGTGCCCCCTCAGCACACCTCTTTG
ACAGCAGCCAGCTGGTCAGTGCACGGAAGAAGCTCAGAAAGACTGCTGAAGGTTTGCAGAGGAGGAGAGT
GAGCTCACCCATGGATGAGGTGCTAGCCTCCTTGAAGCGTGGTAGTTTTCATCTGAAAAAGGTTGAACAG
CGAACTCTGCCTCCTTTTCCTGATGAAGATGATAGTAATAATATCTTGGCACAAATAAGGAAAGGGGTAA
AATTGAAGAAGGTACAGAAGGATGTTTTGAGAGAATCCTTCACACTTCTACCCGATACAGACCCTCTAAC
ACGGAGCATCCATGAAGCTCTTAGAAGAATTAAAGAAGCATCCCCAGAGTCAGAGGACGAAGAGGAGGCT
TTACCTTGCACAGACTGGGAGAACTAA

Translation (988 aa):
MSFALEETLESDWVAVRPHVFDEREKHKFVFIVAWNEIEGKFAITCHNRTAQRQRSGSREQAGARGGAEA
GGAASDGSRGPGSPAGRGRPEATASATLVRSPGPRRSSAWAEGGSPRSTRSLLGDPRLRSPGSKGAESRL
RSPVRAKPIPGQKTSEADDAAGAAAAAARPAPREAQVSSVRIVSASGTVSEEIEVLEMVKEDEAPLALSD
AEQPPPATELESPAEECSWAGLFSFQDLRAVHQQLCSVNSQLEPCLPVFPEEPSGMWTVLFGGAPEMTEQ
EIDTLCYQLQVYLGHGLDTCGWKILSQVLFTETDDPEEYYESLSELRQKGYEEVLQRARKRIQELLDKHK
NTESMVELLDLYQMEDEAYSSLAEATTELYQYLLQPFRDMRELAMLRRQQIKISMENDYLGPRRIESLQK
EDADWQRKAHMAVLSIQDLTVKYFEITAKAQKAVYDRMRADQKKFGKASWAAAAERMEKLQYAVSKETLQ
MMRAKEICLEQRKHALKEEMQSLRGGTEAIARLDQLEADYYDLQLQLYEVQFEILKCEELLLTAQLESIK
RLISEKRDEVVYYDTYESMEAMLEKEEMAASAYLQREELQKLQQKARQLEARRGRVSAKKSYLRNKKEIC
IAKHNEKIQQRTRIEDEYRTHHTVQLKREKLHDEEERKSAWVSQERQRTLDRLRTFKQRYPGQVILKSTR
LRLAHARRKGAASPVLQEDHCDSLPSVLQVEEKTEEVGEGRVKRGPSQTTEPQSLVQLEDTSLTQLEATS
LPLSGVTSELPPTISLPLLNNNLEPCSVTINPLPSPLPPTPPPPPPPPPPPPPPPLPVAKDSGPETLEKD
LPRKEGNEKRIPKSASAPSAHLFDSSQLVSARKKLRKTAEGLQRRRVSSPMDEVLASLKRGSFHLKKVEQ
RTLPPFPDEDDSNNILAQIRKGVKLKKVQKDVLRESFTLLPDTDPLTRSIHEALRRIKEASPESEDEEEA
LPCTDWEN


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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