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Report for CCDS9951.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9951.1 Public Homo sapiens 14 SETD3 24 110 108 CCDS HistoryNCBI Gene:84193Re-query CCDS DB by CCDS ID:9951.1Re-query CCDS DB by GeneID:84193See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9951.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000331768.10 ENSP00000327436.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000331768.10Link to Ensembl Protein Viewer:ENSP00000327436.5Re-query CCDS DB by Nucleotide ID:ENST00000331768Re-query CCDS DB by Protein ID:ENSP00000327436
Original member Current member NCBI NM_032233.3 NP_115609.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032233.3Link to Protein Sequence:NP_115609.2Re-query CCDS DB by Nucleotide ID:NM_032233Re-query CCDS DB by Protein ID:NP_115609Link to BLAST:NP_115609.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115609.2 594 Q86TU7-1 594 100% 0 0

Chromosomal Locations for CCDS 9951.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 99398679 99399125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99400099 99400259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99404225 99404310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99405205 99405371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99406516 99406590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99412951 99413065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99413876 99413934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99458279 99458535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99459113 99459185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99461192 99461340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99463486 99463578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99465703 99465805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1785 nt):
ATGGGTAAGAAGAGTCGAGTAAAAACTCAGAAATCTGGCACTGGTGCTACAGCAACTGTGTCACCAAAGG
AAATCTTGAACCTGACCAGTGAGCTGCTGCAGAAATGCAGCAGTCCGGCGCCTGGCCCAGGAAAAGAGTG
GGAAGAGTATGTGCAGATCCGGACTCTGGTTGAGAAAATACGGAAAAAGCAAAAAGGTCTGTCCGTTACT
TTTGATGGAAAAAGAGAAGATTACTTTCCTGATCTAATGAAATGGGCCTCTGAAAATGGGGCTTCTGTCG
AGGGTTTTGAAATGGTTAACTTCAAAGAAGAGGGCTTTGGTTTGAGAGCAACAAGAGATATCAAGGCAGA
AGAATTGTTTTTATGGGTTCCACGAAAATTGCTAATGACTGTTGAATCTGCTAAAAATTCAGTGTTGGGG
CCCTTATATTCTCAAGACCGAATCCTTCAAGCCATGGGAAACATCGCACTGGCCTTTCATTTGCTGTGTG
AGCGAGCCAGCCCTAACTCCTTCTGGCAGCCCTATATTCAAACCCTCCCCAGTGAATATGACACTCCTCT
CTACTTTGAAGAAGATGAAGTTCGGTATCTTCAGTCCACACAAGCTATACATGATGTCTTCAGCCAGTAT
AAAAACACAGCTCGACAGTACGCCTACTTCTATAAAGTCATCCAGACCCATCCTCATGCCAACAAACTAC
CCTTGAAGGATTCTTTCACTTACGAGGACTACAGGTGGGCAGTCTCTTCTGTTATGACGAGGCAAAACCA
AATTCCCACAGAGGATGGTTCCCGCGTGACCCTGGCTCTGATTCCTTTATGGGATATGTGTAACCACACC
AACGGCCTGATCACTACTGGTTACAACCTGGAAGATGACCGCTGTGAGTGTGTGGCTCTGCAGGATTTTC
GGGCTGGAGAGCAGATTTACATTTTTTATGGCACTCGATCCAACGCAGAGTTTGTGATCCACAGTGGTTT
TTTCTTTGACAATAACTCACACGACAGAGTGAAAATAAAGCTTGGAGTGAGTAAAAGTGACAGACTCTAC
GCCATGAAGGCCGAGGTCTTGGCTCGTGCCGGCATCCCCACTTCCAGTGTTTTTGCATTGCATTTTACCG
AGCCGCCCATCTCTGCTCAGCTTTTGGCTTTTCTCCGAGTATTCTGTATGACTGAAGAAGAACTGAAAGA
ACACTTGCTGGGAGACAGCGCTATTGATAGAATCTTCACCTTGGGGAACTCGGAATTTCCTGTTAGCTGG
GACAACGAGGTCAAACTTTGGACATTTCTTGAAGATAGAGCCTCACTTCTTTTAAAAACATATAAAACAA
CTATTGAGGAAGATAAATCCGTCTTGAAAAACCACGATCTTTCTGTTCGTGCAAAAATGGCCATCAAATT
GCGCTTAGGTGAGAAAGAGATTTTGGAAAAAGCAGTAAAGAGTGCAGCTGTCAACCGGGAATACTATCGC
CAACAGATGGAGGAAAAGGCTCCGCTTCCCAAATATGAAGAGAGTAACCTTGGGCTGTTGGAGAGCAGCG
TGGGGGACTCGAGGCTCCCCCTGGTCTTGAGAAACCTCGAGGAGGAGGCTGGAGTGCAGGATGCCTTGAA
CATCAGAGAGGCAATCAGCAAAGCAAAGGCCACAGAAAACGGGCTTGTAAACGGTGAAAACTCTATCCCT
AATGGGACCAGGTCCGAAAATGAAAGTCTCAATCAAGAAAGTAAAAGAGCAGTTGAAGACGCCAAAGGAT
CTTCTTCAGACAGCACTGCTGGAGTTAAGGAGTAG

Translation (594 aa):
MGKKSRVKTQKSGTGATATVSPKEILNLTSELLQKCSSPAPGPGKEWEEYVQIRTLVEKIRKKQKGLSVT
FDGKREDYFPDLMKWASENGASVEGFEMVNFKEEGFGLRATRDIKAEELFLWVPRKLLMTVESAKNSVLG
PLYSQDRILQAMGNIALAFHLLCERASPNSFWQPYIQTLPSEYDTPLYFEEDEVRYLQSTQAIHDVFSQY
KNTARQYAYFYKVIQTHPHANKLPLKDSFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHT
NGLITTGYNLEDDRCECVALQDFRAGEQIYIFYGTRSNAEFVIHSGFFFDNNSHDRVKIKLGVSKSDRLY
AMKAEVLARAGIPTSSVFALHFTEPPISAQLLAFLRVFCMTEEELKEHLLGDSAIDRIFTLGNSEFPVSW
DNEVKLWTFLEDRASLLLKTYKTTIEEDKSVLKNHDLSVRAKMAIKLRLGEKEILEKAVKSAAVNREYYR
QQMEEKAPLPKYEESNLGLLESSVGDSRLPLVLRNLEEEAGVQDALNIREAISKAKATENGLVNGENSIP
NGTRSENESLNQESKRAVEDAKGSSSDSTAGVKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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