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Report for CCDS1688.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1688.1 Public Homo sapiens 2 CYRIA 24 110 108 CCDS HistoryNCBI Gene:81553Re-query CCDS DB by CCDS ID:1688.1Re-query CCDS DB by GeneID:81553See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1688.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381323.7 ENSP00000370724.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381323.7Link to Ensembl Protein Viewer:ENSP00000370724.3Re-query CCDS DB by Nucleotide ID:ENST00000381323Re-query CCDS DB by Protein ID:ENSP00000370724
Original member Current member EBI ENST00000406434.5 ENSP00000384771.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000406434.5Link to Ensembl Protein Viewer:ENSP00000384771.1Re-query CCDS DB by Nucleotide ID:ENST00000406434Re-query CCDS DB by Protein ID:ENSP00000384771
Original member Current member NCBI NM_030797.4 NP_110424.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030797.4Link to Protein Sequence:NP_110424.1Re-query CCDS DB by Nucleotide ID:NM_030797Re-query CCDS DB by Protein ID:NP_110424Link to BLAST:NP_110424.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_110424.1 323 Q9H0Q0 323 100% 0 0

Chromosomal Locations for CCDS 1688.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 16552936 16552999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 16555069 16555139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 16559460 16559586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 16560990 16561069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 16561161 16561277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 16561456 16561533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 16562005 16562141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 16563989 16564094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 16565646 16565767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 16588050 16588119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGGGAAACCTGCTCAAAGTCCTTACCAGGGAAATTGAAAACTATCCACACTTTTTCCTGGATTTTGAAA
ATGCTCAGCCTACAGAAGGAGAGAGAGAAATCTGGAACCAGATCAGCGCCGTCCTTCAGGATTCTGAGAG
CATCCTTGCAGACCTGCAGGCTTACAAAGGCGCAGGCCCAGAGATCCGAGATGCAATTCAAAATCCCAAT
GACATTCAGCTTCAAGAAAAAGCTTGGAATGCGGTGTGCCCTCTTGTTGTGAGGCTAAAGAGATTTTACG
AGTTTTCCATTAGACTAGAAAAAGCTCTTCAGAGTTTATTGGAATCTCTGACTTGTCCACCCTACACACC
AACCCAACACCTGGAAAGGGAACAGGCCCTGGCAAAGGAGTTTGCCGAAATTTTACATTTTACCCTTCGA
TTCGATGAGCTGAAGATGAGGAACCCGGCTATTCAGAATGACTTCAGCTACTACAGAAGAACAATCAGTC
GCAACCGCATCAACAACATGCACCTAGACATTGAGAATGAAGTCAATAATGAGATGGCCAATCGAATGTC
CCTCTTCTATGCAGAAGCCACGCCAATGCTGAAAACCCTTAGCAATGCCACAATGCACTTTGTCTCTGAA
AACAAAACTCTGCCAATAGAGAACACCACAGACTGCCTCAGCACAATGACAAGTGTCTGTAAAGTCATGC
TGGAAACTCCGGAGTACAGAAGTAGGTTTACGAGTGAAGAGACCCTGATGTTCTGCATGAGGGTGATGGT
GGGAGTCATCATCCTCTATGACCATGTCCACCCTGTGGGAGCTTTCTGCAAGACATCCAAGATCGATATG
AAAGGCTGCATAAAAGTTTTGAAGGAGCAGGCCCCAGACAGTGTGGAGGGGCTGCTAAATGCCCTCAGGT
TCACTACAAAGCACTTGAACGATGAATCAACTTCCAAACAGATTCGAGCAATGCTTCAGTAG

Translation (323 aa):
MGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAGPEIRDAIQNPN
DIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQHLEREQALAKEFAEILHFTLR
FDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVNNEMANRMSLFYAEATPMLKTLSNATMHFVSE
NKTLPIENTTDCLSTMTSVCKVMLETPEYRSRFTSEETLMFCMRVMVGVIILYDHVHPVGAFCKTSKIDM
KGCIKVLKEQAPDSVEGLLNALRFTTKHLNDESTSKQIRAMLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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