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Report for CCDS4823.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4823.1 Public Homo sapiens 6 SRSF3 24 110 108 CCDS HistoryNCBI Gene:6428Re-query CCDS DB by CCDS ID:4823.1Re-query CCDS DB by GeneID:6428See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4823.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373715.11 ENSP00000362820.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373715.11Link to Ensembl Protein Viewer:ENSP00000362820.5Re-query CCDS DB by Nucleotide ID:ENST00000373715Re-query CCDS DB by Protein ID:ENSP00000362820
Original member Current member EBI ENST00000620941.1 ENSP00000482833.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000620941.1Link to Ensembl Protein Viewer:ENSP00000482833.1Re-query CCDS DB by Nucleotide ID:ENST00000620941Re-query CCDS DB by Protein ID:ENSP00000482833
Original member Current member NCBI NM_003017.5 NP_003008.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003017.5Link to Protein Sequence:NP_003008.1Re-query CCDS DB by Nucleotide ID:NM_003017Re-query CCDS DB by Protein ID:NP_003008Link to BLAST:NP_003008.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003008.1 164 P84103-1 164 100% 0 0

Chromosomal Locations for CCDS 4823.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 36596763 36596968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36598849 36598983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36601152 36601190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36601708 36601794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36601962 36601989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (495 nt):
ATGCATCGTGATTCCTGTCCATTGGACTGTAAGGTTTATGTAGGCAATCTTGGAAACAATGGCAACAAGA
CGGAATTGGAACGGGCTTTTGGCTACTATGGACCACTCCGAAGTGTGTGGGTTGCTAGAAACCCACCCGG
CTTTGCTTTTGTTGAATTTGAAGATCCCCGAGATGCAGCTGATGCAGTCCGAGAGCTAGATGGAAGAACA
CTATGTGGCTGCCGTGTAAGAGTGGAACTGTCGAATGGTGAAAAAAGAAGTAGAAATCGTGGCCCACCTC
CCTCTTGGGGTCGTCGCCCTCGAGATGATTATCGTAGGAGGAGTCCTCCACCTCGTCGCAGATCTCCAAG
AAGGAGAAGCTTCTCTCGCAGCCGGAGCAGGTCCCTTTCTAGAGATAGGAGAAGAGAGAGATCGCTGTCT
CGGGAGAGAAATCACAAGCCGTCCCGATCCTTCTCTAGGTCTCGTAGTCGATCTAGGTCAAATGAAAGGA
AATAG

Translation (164 aa):
MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT
LCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLS
RERNHKPSRSFSRSRSRSRSNERK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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  VEGA Genome Browser

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