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Report for CCDS10720.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10720.1 Public Homo sapiens 16 SHCBP1 24 110 108 CCDS HistoryNCBI Gene:79801Re-query CCDS DB by CCDS ID:10720.1Re-query CCDS DB by GeneID:79801See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10720.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000303383.8 ENSP00000306473.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000303383.8Link to Ensembl Protein Viewer:ENSP00000306473.3Re-query CCDS DB by Nucleotide ID:ENST00000303383Re-query CCDS DB by Protein ID:ENSP00000306473
Original member Current member NCBI NM_024745.5 NP_079021.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024745.5Link to Protein Sequence:NP_079021.4Re-query CCDS DB by Nucleotide ID:NM_024745Re-query CCDS DB by Protein ID:NP_079021Link to BLAST:NP_079021.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079021.4 672 Q8NEM2 672 100% 0 0

Chromosomal Locations for CCDS 10720.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 46581729 46582054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46583516 46583657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46584003 46584089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46595552 46595670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46599831 46599962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46603539 46603659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46603975 46604143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46604228 46604461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46608297 46608389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46615946 46616154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46617634 46617749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46618205 46618372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 46621257 46621359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2019 nt):
ATGGCTGACGGGTCGCTGACGGGCGGCGGTCTGGAGGCAGCGGCCATGGCGCCGGAGCGCATGGGCTGGG
CGGTGGAGCAGGAGCTGGCGTCTCTGGAGAAAGGTTTGTTCCAAGATGAAGATTCATGCAGTGATTGTAG
CTACCGTGATAAACCAGGTTCTAGTTTACAAAGTTTTATGCCAGAAGGAAAAACCTTTTTCCCAGAAATT
TTCCAAACAAATCAACTTTTGTTCTATGAGCGATTCAGAGCCTATCAAGATTACATTTTAGCTGACTGCA
AGGCCTCTGAGGTACAGGAATTCACAGCTGAGTTCTTGGAGAAGGTCCTTGAGCCATCTGGATGGCGGGC
AGTCTGGCACACTAATGTGTTCAAGGTGCTGGTTGAGATCACAGATGTGGACTTTGCAGCCTTGAAGGCA
GTGGTGAGGCTTGCTGAACCATACCTCTGTGACTCTCAAGTGAGCACTTTTACCATGGAGTGCATGAAGG
AGCTCCTTGATCTGAAGGAGCATCGGTTGCCCCTGCAGGAGCTGTGGGTGGTGTTTGATGATTCAGGAGT
GTTTGACCAGACAGCCCTTGCAATTGAGCATGTCAGATTTTTCTACCAAAACATTTGGAGGAGTTGGGAT
GAAGAAGAGGAGGATGAATACGATTATTTTGTCAGATGTGTTGAACCTCGATTAAGATTGCATTATGACA
TTCTTGAAGACCGAGTTCCATCAGGACTTATTGTTGACTACCACAATCTGTTGTCTCAATGTGAGGAGAG
TTACAGGAAATTTTTAAATCTGAGAAGCAGTTTGTCAAATTGTAACTCTGATTCCGAGCAGGAAAATATC
TCCATGGTGGAAGGGTTAAAATTGTATTCGGAGATGGAACAGTTGAAACAAAAGCTGAAACTCATTGAGA
ATCCTTTGTTGAGGTATGTGTTTGGTTATCAGAAGAATTCTAACATCCAAGCAAAGGGTGTCCGTTCCAG
CGGTCAGAAGATCACTCATGTGGTCTCCTCCACCATGATGGCTGGTCTCCTGCGGTCCCTGCTTACGGAC
AGGCTTTGCCAGGAGCCTGGTGAGGAAGAAAGAGAAATTCAGTTCCATAGTGATCCATTGTCTGCTATAA
ATGCCTGCTTCGAAGGTGACACTGTTATTGTTTGTCCTGGCCATTATGTGGTACATGGCACTTTCTCCAT
TGCTGACTCCATTGAGTTGGAAGGATATGGCCTACCAGATGACATTGTGATAGAAAAGAGGGGCAAAGGC
GACACTTTTGTGGACTGCACTGGTGCTGATATTAAAATCTCAGGCATAAAATTTGTTCAGCATGATGCTG
TAGAGGGAATCTTAATTGTTCACCGTGGTAAGACTACGCTGGAAAACTGTGTGCTGCAGTGTGAGACGAC
CGGAGTCACAGTGCGGACATCAGCAGAGTTTCTAATGAAGAACTCGGATTTATATGGCGCCAAGGGTGCT
GGTATAGAAATCTACCCTGGGAGTCAGTGCACCCTGAGTGACAATGGGATCCATCACTGCAAGGAAGGGA
TCCTCATTAAGGACTTCTTAGATGAACATTATGACATTCCCAAGATATCCATGGTGAATAATATAATACA
TAATAATGAAGGTTATGGTGTTGTCTTGGTGAAACCTACAATCTTCTCTGACCTGCAAGAAAATGCTGAA
GATGGAACTGAAGAAAATAAAGCGCTTAAAATTCAGACAAGTGGAGAGCCAGATGTGGCTGAAAGAGTGG
ATCTAGAAGAGCTGATTGAGTGTGCAACTGGTAAAATGGAGCTTTGTGCAAGAACTGACCCTTCTGAGCA
AGTCGAGGGAAATTGTGAAATTGTAAATGAACTAATTGCTGCCTCCACACAGAAAGGCCAGATAAAGAAG
AAAAGGTTGAGTGAACTGGGGATCACGCAAGCTGATGACAACTTAATGTCACAGGAGATGTTTGTTGGGA
TTGTGGGGAACCAGTTCAAGTGGAATGGGAAAGGTAGTTTTGGCACATTTCTTTTCTGA

Translation (672 aa):
MADGSLTGGGLEAAAMAPERMGWAVEQELASLEKGLFQDEDSCSDCSYRDKPGSSLQSFMPEGKTFFPEI
FQTNQLLFYERFRAYQDYILADCKASEVQEFTAEFLEKVLEPSGWRAVWHTNVFKVLVEITDVDFAALKA
VVRLAEPYLCDSQVSTFTMECMKELLDLKEHRLPLQELWVVFDDSGVFDQTALAIEHVRFFYQNIWRSWD
EEEEDEYDYFVRCVEPRLRLHYDILEDRVPSGLIVDYHNLLSQCEESYRKFLNLRSSLSNCNSDSEQENI
SMVEGLKLYSEMEQLKQKLKLIENPLLRYVFGYQKNSNIQAKGVRSSGQKITHVVSSTMMAGLLRSLLTD
RLCQEPGEEEREIQFHSDPLSAINACFEGDTVIVCPGHYVVHGTFSIADSIELEGYGLPDDIVIEKRGKG
DTFVDCTGADIKISGIKFVQHDAVEGILIVHRGKTTLENCVLQCETTGVTVRTSAEFLMKNSDLYGAKGA
GIEIYPGSQCTLSDNGIHHCKEGILIKDFLDEHYDIPKISMVNNIIHNNEGYGVVLVKPTIFSDLQENAE
DGTEENKALKIQTSGEPDVAERVDLEELIECATGKMELCARTDPSEQVEGNCEIVNELIAASTQKGQIKK
KRLSELGITQADDNLMSQEMFVGIVGNQFKWNGKGSFGTFLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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