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Report for CCDS8347.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8347.1 Public Homo sapiens 11 SIK2 24 110 108 CCDS HistoryNCBI Gene:23235Re-query CCDS DB by CCDS ID:8347.1Re-query CCDS DB by GeneID:23235See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8347.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304987.4 ENSP00000305976.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000304987.4Link to Ensembl Protein Viewer:ENSP00000305976.3Re-query CCDS DB by Nucleotide ID:ENST00000304987Re-query CCDS DB by Protein ID:ENSP00000305976
Original member Current member NCBI NM_015191.3 NP_056006.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015191.3Link to Protein Sequence:NP_056006.1Re-query CCDS DB by Nucleotide ID:NM_015191Re-query CCDS DB by Protein ID:NP_056006Link to BLAST:NP_056006.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056006.1 926 Q9H0K1 926 100% 0 0

Chromosomal Locations for CCDS 8347.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 111602564 111602698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111616243 111616359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111620339 111620402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111688001 111688162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111700886 111701010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111701452 111701575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111703203 111703423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111704987 111705139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111712211 111712375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111719775 111720003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111720478 111720762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111720899 111721062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111721830 111721940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111722665 111722756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 111723496 111724129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2781 nt):
ATGGTCATGGCGGATGGCCCGAGGCACTTGCAGCGCGGGCCGGTCCGGGTGGGGTTCTACGACATCGAGG
GCACGCTGGGCAAGGGCAACTTCGCTGTGGTGAAGCTGGGGCGGCACCGGATCACCAAGACGGAGGTGGC
AATAAAAATAATCGATAAGTCTCAGCTGGATGCAGTGAACCTTGAGAAAATCTACCGAGAAGTACAAATA
ATGAAAATGTTAGACCACCCTCACATAATCAAACTTTATCAGGTAATGGAGACCAAAAGTATGTTGTACC
TTGTGACAGAATATGCCAAAAATGGAGAAATTTTTGACTATCTTGCTAATCATGGCCGGTTAAATGAGTC
TGAAGCCAGGCGAAAATTCTGGCAAATCCTGTCTGCTGTTGATTATTGTCATGGTCGGAAGATTGTGCAC
CGTGACCTCAAAGCTGAAAATCTCCTGCTGGATAACAACATGAATATCAAAATAGCAGATTTCGGTTTTG
GAAATTTCTTTAAAAGTGGTGAACTGCTGGCAACATGGTGTGGCAGCCCCCCTTATGCAGCCCCAGAAGT
CTTTGAAGGGCAGCAGTATGAAGGACCACAGCTGGACATCTGGAGTATGGGAGTTGTTCTTTATGTCCTT
GTCTGTGGAGCTCTGCCCTTTGATGGACCGACTCTTCCAATTTTGAGGCAGAGGGTTCTGGAAGGAAGAT
TCCGGATTCCGTATTTCATGTCAGAAGATTGCGAGCACCTTATCCGAAGGATGTTGGTCCTAGACCCATC
CAAACGGCTAACCATAGCCCAAATCAAGGAGCATAAATGGATGCTCATAGAAGTTCCTGTCCAGAGACCT
GTTCTCTATCCACAAGAGCAAGAAAATGAGCCATCCATCGGGGAGTTTAATGAGCAGGTTCTGCGACTGA
TGCACAGCCTTGGAATAGATCAGCAGAAAACCATTGAGTCTTTGCAGAACAAGAGCTATAACCACTTTGC
TGCCATTTATTTCTTGTTGGTGGAGCGCCTGAAATCACATCGGAGCAGTTTCCCAGTGGAGCAGAGACTT
GATGGCCGCCAGCGTCGGCCTAGCACCATTGCTGAGCAAACAGTTGCCAAGGCACAGACTGTGGGGCTCC
CAGTGACCATGCATTCACCGAACATGAGGCTGCTGCGATCTGCCCTCCTCCCCCAGGCATCCAACGTGGA
GGCCTTTTCATTTCCAGCATCTGGCTGTCAGGCGGAAGCTGCATTCATGGAAGAAGAGTGTGTGGACACT
CCAAAGGTCAATGGCTGTCTGCTTGACCCTGTGCCTCCTGTCCTGGTGCGGAAGGGATGCCAGTCACTGC
CCAGCAACATGATGGAGACCTCCATTGACGAAGGGCTGGAGACAGAAGGAGAGGCCGAGGAAGACCCCGC
TCATGCCTTTGAGGCATTTCAGTCCACACGCAGCGGGCAGAGACGGCACACTCTGTCAGAAGTGACCAAT
CAACTGGTCGTGATGCCTGGGGCAGGGAAAATTTTCTCCATGAATGACAGCCCCTCCCTTGACAGTGTGG
ACTCTGAGTATGATATGGGGTCTGTTCAGAGGGACCTGAACTTTCTGGAAGACAACCCTTCCCTTAAGGA
CATCATGTTAGCCAATCAGCCTTCACCCCGCATGACATCTCCCTTCATAAGCCTGAGACCTACCAACCCA
GCCATGCAGGCTCTGAGCTCCCAGAAACGAGAGGTCCACAACAGGTCTCCAGTGAGCTTCAGAGAGGGCC
GCAGAGCATCAGATACCTCCCTCACCCAGGGAATTGTAGCATTTAGACAACATCTTCAGAATCTGGCTAG
AACCAAAGGAATTCTAGAGTTGAACAAAGTGCAGTTGTTGTATGAACAAATAGGACCGGAGGCAGACCCT
AACCTGGCGCCGGCGGCTCCTCAGCTCCAGGACCTTGCTAGCAGCTGCCCTCAGGAAGAAGTTTCTCAGC
AGCAGGAAAGCGTCTCCACTCTCCCTGCCAGCGTGCATCCCCAGCTGTCCCCACGGCAGAGCCTGGAGAC
CCAGTACCTGCAGCACAGACTCCAGAAGCCCAGCCTTCTGTCAAAGGCCCAGAACACCTGTCAGCTTTAT
TGCAAAGAACCACCGCGGAGCCTTGAGCAGCAGCTGCAGGAACATAGGCTCCAGCAGAAGCGACTCTTTC
TTCAGAAGCAGTCTCAACTGCAGGCCTATTTTAATCAGATGCAGATAGCAGAGAGCTCCTACCCACAGCC
AAGTCAGCAGCTGCCCCTTCCCCGCCAGGAGACTCCACCGCCTTCTCAGCAGGCCCCACCGTTCAGCCTG
ACCCAGCCCCTGAGCCCCGTCCTGGAGCCTTCCTCCGAGCAGATGCAATACAGCCCTTTCCTCAGCCAGT
ACCAAGAGATGCAGCTTCAGCCCCTGCCCTCCACTTCCGGTCCCCGGGCTGCTCCTCCTCTGCCCACGCA
GCTACAGCAGCAGCAGCCGCCACCGCCACCACCCCCTCCACCACCACGACAGCCAGGAGCTGCCCCAGCC
CCCTTACAGTTCTCCTATCAGACTTGTGAGCTGCCAAGCGCTGCTTCCCCTGCGCCAGACTATCCCACTC
CCTGTCAGTATCCTGTGGATGGAGCCCAGCAGAGCGACCTAACGGGGCCAGACTGTCCCAGAAGCCCAGG
ACTGCAAGAGGCCCCCTCCAGCTACGACCCACTAGCCCTCTCTGAGCTACCTGGACTCTTTGATTGTGAA
ATGCTAGACGCTGTGGATCCACAACACAACGGGTATGTCCTGGTGAATTAG

Translation (926 aa):
MVMADGPRHLQRGPVRVGFYDIEGTLGKGNFAVVKLGRHRITKTEVAIKIIDKSQLDAVNLEKIYREVQI
MKMLDHPHIIKLYQVMETKSMLYLVTEYAKNGEIFDYLANHGRLNESEARRKFWQILSAVDYCHGRKIVH
RDLKAENLLLDNNMNIKIADFGFGNFFKSGELLATWCGSPPYAAPEVFEGQQYEGPQLDIWSMGVVLYVL
VCGALPFDGPTLPILRQRVLEGRFRIPYFMSEDCEHLIRRMLVLDPSKRLTIAQIKEHKWMLIEVPVQRP
VLYPQEQENEPSIGEFNEQVLRLMHSLGIDQQKTIESLQNKSYNHFAAIYFLLVERLKSHRSSFPVEQRL
DGRQRRPSTIAEQTVAKAQTVGLPVTMHSPNMRLLRSALLPQASNVEAFSFPASGCQAEAAFMEEECVDT
PKVNGCLLDPVPPVLVRKGCQSLPSNMMETSIDEGLETEGEAEEDPAHAFEAFQSTRSGQRRHTLSEVTN
QLVVMPGAGKIFSMNDSPSLDSVDSEYDMGSVQRDLNFLEDNPSLKDIMLANQPSPRMTSPFISLRPTNP
AMQALSSQKREVHNRSPVSFREGRRASDTSLTQGIVAFRQHLQNLARTKGILELNKVQLLYEQIGPEADP
NLAPAAPQLQDLASSCPQEEVSQQQESVSTLPASVHPQLSPRQSLETQYLQHRLQKPSLLSKAQNTCQLY
CKEPPRSLEQQLQEHRLQQKRLFLQKQSQLQAYFNQMQIAESSYPQPSQQLPLPRQETPPPSQQAPPFSL
TQPLSPVLEPSSEQMQYSPFLSQYQEMQLQPLPSTSGPRAAPPLPTQLQQQQPPPPPPPPPPRQPGAAPA
PLQFSYQTCELPSAASPAPDYPTPCQYPVDGAQQSDLTGPDCPRSPGLQEAPSSYDPLALSELPGLFDCE
MLDAVDPQHNGYVLVN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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