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Report for CCDS3268.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3268.1 Public Homo sapiens 3 EPHB3 24 110 108 CCDS HistoryNCBI Gene:2049Re-query CCDS DB by CCDS ID:3268.1Re-query CCDS DB by GeneID:2049See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3268.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000330394.3 ENSP00000332118.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000330394.3Link to Ensembl Protein Viewer:ENSP00000332118.2Re-query CCDS DB by Nucleotide ID:ENST00000330394Re-query CCDS DB by Protein ID:ENSP00000332118
Original member Current member NCBI NM_004443.4 NP_004434.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004443.4Link to Protein Sequence:NP_004434.2Re-query CCDS DB by Nucleotide ID:NM_004443Re-query CCDS DB by Protein ID:NP_004434Link to BLAST:NP_004434.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004434.2 998 P54753 998 100% 0 0

Chromosomal Locations for CCDS 3268.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 184562236 184562353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184571318 184571382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184572504 184573176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184575830 184575985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184576842 184577183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184577343 184577467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184577658 184577817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184577898 184578006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184578414 184578466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184579477 184579599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184579687 184579934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184580402 184580617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184580729 184580878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184580972 184581165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184581253 184581408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184581514 184581622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2997 nt):
ATGGCCAGAGCCCGCCCGCCGCCGCCGCCGTCGCCGCCGCCGGGGCTTCTGCCGCTGCTCCCTCCGCTGC
TGCTGCTGCCGCTGCTGCTGCTGCCCGCCGGCTGCCGGGCGCTGGAAGAGACCCTCATGGACACAAAATG
GGTAACATCTGAGTTGGCGTGGACATCTCATCCAGAAAGTGGGTGGGAAGAGGTGAGTGGCTACGATGAG
GCCATGAATCCCATCCGCACATACCAGGTGTGTAATGTGCGCGAGTCAAGCCAGAACAACTGGCTTCGCA
CGGGGTTCATCTGGCGGCGGGATGTGCAGCGGGTCTACGTGGAGCTCAAGTTCACTGTGCGTGACTGCAA
CAGCATCCCCAACATCCCCGGCTCCTGCAAGGAGACCTTCAACCTCTTCTACTACGAGGCTGACAGCGAT
GTGGCCTCAGCCTCCTCCCCCTTCTGGATGGAGAACCCCTACGTGAAAGTGGACACCATTGCACCCGATG
AGAGCTTCTCGCGGCTGGATGCCGGCCGTGTCAACACCAAGGTGCGCAGCTTTGGGCCACTTTCCAAGGC
TGGCTTCTACCTGGCCTTCCAGGACCAGGGCGCCTGCATGTCGCTCATCTCCGTGCGCGCCTTCTACAAG
AAGTGTGCATCCACCACCGCAGGCTTCGCACTCTTCCCCGAGACCCTCACTGGGGCGGAGCCCACCTCGC
TGGTCATTGCTCCTGGCACCTGCATCCCTAACGCCGTGGAGGTGTCGGTGCCACTCAAGCTCTACTGCAA
CGGCGATGGGGAGTGGATGGTGCCTGTGGGTGCCTGCACCTGTGCCACCGGCCATGAGCCAGCTGCCAAG
GAGTCCCAGTGCCGCCCCTGTCCCCCTGGGAGCTACAAGGCGAAGCAGGGAGAGGGGCCCTGCCTCCCAT
GTCCCCCCAACAGCCGTACCACCTCCCCAGCCGCCAGCATCTGCACCTGCCACAATAACTTCTACCGTGC
AGACTCGGACTCTGCGGACAGTGCCTGTACCACCGTGCCATCTCCACCCCGAGGTGTGATCTCCAATGTG
AATGAAACCTCACTGATCCTCGAGTGGAGTGAGCCCCGGGACCTGGGTGGCCGGGATGACCTCCTGTACA
ATGTCATCTGCAAGAAGTGCCATGGGGCTGGAGGGGCCTCAGCCTGCTCACGCTGTGATGACAACGTGGA
GTTTGTGCCTCGGCAGCTGGGCCTGACGGAGCGCCGGGTCCACATCAGCCATCTGCTGGCCCACACGCGC
TACACCTTTGAGGTGCAGGCGGTCAACGGTGTCTCGGGCAAGAGCCCTCTGCCGCCTCGTTATGCGGCCG
TGAATATCACCACAAACCAGGCTGCCCCGTCTGAAGTGCCCACACTACGCCTGCACAGCAGCTCAGGCAG
CAGCCTCACCCTATCCTGGGCACCCCCAGAGCGGCCCAACGGAGTCATCCTGGACTACGAGATGAAGTAC
TTTGAGAAGAGCGAGGGCATCGCCTCCACAGTGACCAGCCAGATGAACTCCGTGCAGCTGGACGGGCTTC
GGCCTGACGCCCGCTATGTGGTCCAGGTCCGTGCCCGCACAGTAGCTGGCTATGGGCAGTACAGCCGCCC
TGCCGAGTTTGAGACCACAAGTGAGAGAGGCTCTGGGGCCCAGCAGCTCCAGGAGCAGCTTCCCCTCATC
GTGGGCTCCGCTACAGCTGGGCTTGTCTTCGTGGTGGCTGTCGTGGTCATCGCTATCGTCTGCCTCAGGA
AGCAGCGACACGGCTCTGATTCGGAGTACACGGAGAAGCTGCAGCAGTACATTGCTCCTGGAATGAAGGT
TTATATTGACCCTTTTACCTACGAGGACCCTAATGAGGCTGTTCGGGAGTTTGCCAAGGAGATCGACGTG
TCCTGCGTCAAGATCGAGGAGGTGATCGGAGCTGGGGAATTTGGGGAAGTGTGCCGTGGTCGACTGAAAC
AGCCTGGCCGCCGAGAGGTGTTTGTGGCCATCAAGACGCTGAAGGTGGGCTACACCGAGAGGCAGCGGCG
GGACTTCCTAAGCGAGGCCTCCATCATGGGTCAGTTTGATCACCCCAATATAATCCGGCTCGAGGGCGTG
GTCACCAAAAGTCGGCCAGTTATGATCCTCACTGAGTTCATGGAAAACTGCGCCCTGGACTCCTTCCTCC
GGCTCAACGATGGGCAGTTCACGGTCATCCAGCTGGTGGGCATGTTGCGGGGCATTGCTGCCGGCATGAA
GTACCTGTCCGAGATGAACTATGTGCACCGCGACCTGGCTGCTCGCAACATCCTTGTCAACAGCAACCTG
GTCTGCAAAGTCTCAGACTTTGGCCTCTCCCGCTTCCTGGAGGATGACCCCTCCGATCCTACCTACACCA
GTTCCCTGGGCGGGAAGATCCCCATCCGCTGGACTGCCCCAGAGGCCATAGCCTATCGGAAGTTCACTTC
TGCTAGTGATGTCTGGAGCTACGGAATTGTCATGTGGGAGGTCATGAGCTATGGAGAGCGACCCTACTGG
GACATGAGCAACCAGGATGTCATCAATGCCGTGGAGCAGGATTACCGGCTGCCACCACCCATGGACTGTC
CCACAGCACTGCACCAGCTCATGCTGGACTGCTGGGTGCGGGACCGGAACCTCAGGCCCAAATTCTCCCA
GATTGTCAATACCCTGGACAAGCTCATCCGCAATGCTGCCAGCCTCAAGGTCATTGCCAGCGCTCAGTCT
GGCATGTCACAGCCCCTCCTGGACCGCACGGTCCCAGATTACACAACCTTCACGACAGTTGGTGATTGGC
TGGATGCCATCAAGATGGGGCGGTACAAGGAGAGCTTCGTCAGTGCGGGGTTTGCATCTTTTGACCTGGT
GGCCCAGATGACGGCAGAAGACCTGCTCCGTATTGGGGTCACCCTGGCCGGCCACCAGAAGAAGATCCTG
AGCAGTATCCAGGACATGCGGCTGCAGATGAACCAGACGCTGCCTGTGCAGGTCTGA

Translation (998 aa):
MARARPPPPPSPPPGLLPLLPPLLLLPLLLLPAGCRALEETLMDTKWVTSELAWTSHPESGWEEVSGYDE
AMNPIRTYQVCNVRESSQNNWLRTGFIWRRDVQRVYVELKFTVRDCNSIPNIPGSCKETFNLFYYEADSD
VASASSPFWMENPYVKVDTIAPDESFSRLDAGRVNTKVRSFGPLSKAGFYLAFQDQGACMSLISVRAFYK
KCASTTAGFALFPETLTGAEPTSLVIAPGTCIPNAVEVSVPLKLYCNGDGEWMVPVGACTCATGHEPAAK
ESQCRPCPPGSYKAKQGEGPCLPCPPNSRTTSPAASICTCHNNFYRADSDSADSACTTVPSPPRGVISNV
NETSLILEWSEPRDLGGRDDLLYNVICKKCHGAGGASACSRCDDNVEFVPRQLGLTERRVHISHLLAHTR
YTFEVQAVNGVSGKSPLPPRYAAVNITTNQAAPSEVPTLRLHSSSGSSLTLSWAPPERPNGVILDYEMKY
FEKSEGIASTVTSQMNSVQLDGLRPDARYVVQVRARTVAGYGQYSRPAEFETTSERGSGAQQLQEQLPLI
VGSATAGLVFVVAVVVIAIVCLRKQRHGSDSEYTEKLQQYIAPGMKVYIDPFTYEDPNEAVREFAKEIDV
SCVKIEEVIGAGEFGEVCRGRLKQPGRREVFVAIKTLKVGYTERQRRDFLSEASIMGQFDHPNIIRLEGV
VTKSRPVMILTEFMENCALDSFLRLNDGQFTVIQLVGMLRGIAAGMKYLSEMNYVHRDLAARNILVNSNL
VCKVSDFGLSRFLEDDPSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYW
DMSNQDVINAVEQDYRLPPPMDCPTALHQLMLDCWVRDRNLRPKFSQIVNTLDKLIRNAASLKVIASAQS
GMSQPLLDRTVPDYTTFTTVGDWLDAIKMGRYKESFVSAGFASFDLVAQMTAEDLLRIGVTLAGHQKKIL
SSIQDMRLQMNQTLPVQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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